Tubastraea coccinea
Lesson, 1830 · speciesAt a glance
Sources13 archives
Databases and archives Tubastraea coccinea's data was compiled from.
WikipediaWikimedia Foundation5 languages↗
BioWikiNetmultilingual Wikipediamultilingual↗
GBIFGlobal Biodiversity Information Facility3 272 records↗
OBISOcean Biodiversity Information System1 932 records↗
ENAEuropean Nucleotide Archive · EMBL-EBI884 eDNA detections↗
BOLD SystemsCentre for Biodiversity Genomics29 specimens↗
LOTUSNatural Products (Wikidata)compounds↗
Open Tree of LifeOpenTreephylogeny backbone↗
GoaTGenomes on a Tree · Sangergenome & karyotype↗
NCBIUS National Library of Medicinegenome & karyotype↗
Paleobiology DatabasePBDB consortiumfossil record↗
Catalogue of LifeCOLtaxonomy↗
GLoBIGlobal Biotic Interactionsbiotic interactions↗Every layer below draws on the sources above — open one to explore it, or use ← → to move between tabs.
Orange cup coral (Tubastraea coccinea) belongs to a group of corals known as large-polyp stony corals. This non-reef building coral extends beautiful translucent tentacles at night.Hawaii Coral Reef Network. 2005. Family Dendrophyllidae: Cup Corals. Tubastraea coccinea is heterotrophic and does not contain zooxanthellae in its tissues as many tropical corals do, allowing it to grow in complete darkness as long as it can capture enough food.
No narrative description available for this taxon yet.
Habitat & environment2
Other traits2
Compounds documented for Tubastraea coccinea across natural-product and food-composition databases — not just the ~150 nutrients on a classic label ("nutritional dark matter").
Compound class profile1 class
Documented compounds7 total
| Compound | Class | Amount | Source |
|---|
A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Tubastraea coccinea has left across the world's sequence archives.
At a glance
★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.
Besides the big genome in the nucleus, cells carry a small, circular loop of DNA inside the cell's energy factories — the mitochondria. It is inherited almost only from the mother and is a leftover from ancient bacteria that moved into the cell. The mitochondrial markers above (ND*, COX, CYTB…) are read from exactly this loop. Outer ring = one strand, inner ring = the other.
The complete instruction manual Tubastraea coccinea carries — its genome. We read it from three angles — how big it is, how the DNA is packed into chromosomes, and how completely it has been sequenced — and explain how to read each value as you go.
Genome sizehow big the whole instruction manual is
Measured in base pairs (bp) — the individual letters of DNA (human ≈ 3.2 Gb, a bacterium a few million). The chart places this genome on a logarithmic scale — each step to the right is ten times bigger — among reference organisms. Across species a bigger genome loosely tracks with larger cells, slower growth and lower-energy lifestyles (powered flight favours small genomes) — yet it does not imply more genes or a more advanced organism (the long-standing C-value paradox).
Sequencing statusassembly quality — how far to trust these numbers
Assembly level tells you how finished the sequence is — from fragmented contigs, through scaffolds, up to a full chromosome-level assembly. BUSCO % estimates completeness: the share of genes expected to be present that were actually found. These describe the data quality, not the organism.
How far back this lineage goes — and how we know. Everything here is measured in Ma, short for “mega-annum”: millions of years ago. The chart reads left to right like a calendar of the Earth, from the deep past on the left to today at the right edgetop to bottom like a core drilled through the Earth, from the deep past at the top down to today at the bottom.
At a glance
When this lineage existed
How to read this: the coloured strip along the bottomdown the left is the geological calendar — the standard epochs (Pliocene, Pleistocene…) every museum uses, shown so you can see which chapter of Earth's history this lineage lived in. This lineage is a young one, so the strip is zoomed in to epochs — the finer subdivisions inside a period. The solid bar is the fossil range: the span between the oldest and the youngest fossil that palaeontologists have assigned to Tubastraea coccinea. Above itBeside it, each dot is one dated fossil find — few enough to count, so they are drawn individually rather than as a graph. The orange marker is the DNA clock: DNA accumulates mutations at a roughly steady rate, so comparing this species' DNA with its relatives estimates when the lineage split off — independently of any fossil. Where the DNA reaches further back than the oldest fossil, the gap is hatched: the ghost lineage. It means the lineage was already out there, but has left us nothing we have dug up yet.
How it livedPBDB
Record type5 210 records
Origin
Range
Depth
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Museum / Voucheredphysical evidence
Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Holding institutions14 of 38 geolocated
Institutions and collections holding physical, vouchered specimens of this species — click a row to fly to it on the map.
| Institution | Specimens |
|---|---|
| Washington, US | 22 |
| FCMMlocation not on record | 19 |
| Unidad Multidisciplinaria de Docencia e Investigación, Campus Sisal, Facultad de Ciencias, Universidad Nacional Autónoma de Méxicolocation not on record | 19 |
| Western Australian Museumlocation not on record | 18 |
| CASlocation not on record | 18 |
| Santa Barbara Museum of Natural Historylocation not on record | 15 |
| National Marine Biodiversity Institute of Korealocation not on record | 15 |
| 15 | |
| Natick, US | 14 |
| Instituto de Investigaciones Marinas y Costeras (INVEMAR)location not on record | 14 |
| Centro Nacional de Acuicultura e Investigaciones Marinaslocation not on record | 13 |
| San Francisco, US | 9 |
| Los Angeles, US | 7 |
| Auckland, NZ | 7 |
| University of California Museum of Paleontologylocation not on record | 7 |
| Florida Museum of Natural History- Zoology, Paleontology & Paleobotanylocation not on record | 4 |
| Puerto Ayora, EC | 4 |
| UM-RSMASlocation not on record | 4 |
| Universidad del Valle (UniValle)location not on record | 4 |
| Universidad del Marlocation not on record | 3 |
| Centro Universitario de la Costa, Universidad de Guadalajaralocation not on record | 3 |
| Museum and Art Gallery of the Northern Territorylocation not on record | 3 |
| Australian Institute of Marine Sciencelocation not on record | 3 |
| Moscow State Universitylocation not on record | 2 |
| University of California Los Angeleslocation not on record | 2 |
| Museums Victorialocation not on record | 2 |
| Honolulu, US | 2 |
| Paris, FR | 2 |
| Unidad Académica de Ecología Marina, Universidad Autónoma de Guerrerolocation not on record | 2 |
| Masindi, UG | 1 |
| WoRMS Editorial Boardlocation not on record | 1 |
| Denver, US | 1 |
| Texas Cooperative Wildlife Collectionlocation not on record | 1 |
| Stockholm, SE | 1 |
| Instituto de Ciencias del Mar y Limnología, Unidad Académica Mazatlán, Universidad Nacional Autónoma de Méxicolocation not on record | 1 |
| BIKlocation not on record | 1 |
| Stockholm, SE | 1 |
| Tapachula, MX | 1 |
Where the DNA of Tubastraea coccinea was picked up in samples of water, soil or air — nobody saw the organism, only its DNA left behind. A trace is a clue that the species was near, not a confirmed sighting.
Signal
Where its DNA was found
How strong is each trace?
Measured at samplingin-field
Modelled climatemodelled
How to read this: each dot is one detection of this species' DNA in an environmental sample. The confidence meter weighs how many independent studies and places back up the signal — one detection in one study is a hint; many across several studies is solid. Records dated before 2008 (when eDNA methods began) are treated as likely mislabeled and left off the map.