Trametes pubescens is a small, thin polypore, or bracket fungus. It has a cream-colored, finely velvety cap surface. Unlike most other turkey tail-like species of Trametes, the cap surface lacks strongly contrasting zones of color. Trametes pubescens is an annual, saprobic fungus, a decomposer of the deadwood of hardwoods, growing in clusters on logs, stumps and downed branches. (It is rarely reported on conifer wood.) It is a purported plant pathogen, infecting peach and nectarine trees. It is inedible. The genome of T. pubescens has been published in 2017 by Zoraide Granchi and coworkers from the OPTIBIOCAT project. The genome contains 39.7 million bases. The consortium estimates that there are 14,451 different genes, which is quite average among saprobic wood-rotting species. The sequencing has been performed in Leiden, The Netherlands
No narrative description available for this taxon yet.
Compounds documented for Trametes pubescens across natural-product and food-composition databases — not just the ~150 nutrients on a classic label ("nutritional dark matter").
Documented compounds2 total
Compound
Class
Amount
Source
DLTRTPLJAAMGPB-UWVGGRQHSA-N
present
NPASS
DLTRTPLJAAMGPB-VHSXEESVSA-N
present
NPASS
05DNA & barcoding13 specimens
A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Trametes pubescens has left across the world's sequence archives.
At a glance
DNA specimens13
Marker genes2
GenBank sequences10
eDNA detections23
Countries6
The DNA barcodea real sequence read deposited for this species
★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.
★ITS10★ITS1
fungal barcode
06Genome at a glanceGoaT · NCBI
The complete instruction manualTrametes pubescens carries — its genome. We read it from three angles — how big it is, how the DNA is packed into chromosomes, and how completely it has been sequenced — and explain how to read each value as you go.
Genome sizehow big the whole instruction manual is
Genome size39 740 000 bp
Measured in base pairs (bp) — the individual letters of DNA (human ≈ 3.2 Gb, a bacterium a few million). The chart places this genome on a logarithmic scale — each step to the right is ten times bigger — among reference organisms. Across species a bigger genome loosely tracks with larger cells, slower growth and lower-energy lifestyles (powered flight favours small genomes) — yet it does not imply more genes or a more advanced organism (the long-standing C-value paradox).
BACTERIUM Carsonella ruddii0.00016 Gb
THIS GENOME Trametes pubescens0.04 Gb
FUNGUS0.04 Gb
INSECT0.25 Gb
HUMAN3.2 Gb
WHEAT17 Gb
FERN Tmesipteris160.45 Gb
Sequencing statusassembly quality — how far to trust these numbers
Assembly level tells you how finished the sequence is — from fragmented contigs, through scaffolds, up to a full chromosome-level assembly. BUSCO % estimates completeness: the share of genes expected to be present that were actually found. These describe the data quality, not the organism.
Assembly levelScaffold
Completeness96.8% BUSCO
07Deep time~0.18 Ma lineage
How far back this lineage goes — and how we know. Everything here is measured in Ma, short for “mega-annum”: millions of years ago. The chart reads left to right like a calendar of the Earth, from the deep past on the left to today at the right edgetop to bottom like a core drilled through the Earth, from the deep past at the top down to today at the bottom.
At a glance
DNA clock origin0.18 Ma TimeTree
When this lineage existed
How to read this: the coloured strip along the bottomdown the left is the geological calendar — the standard epochs (Pliocene, Pleistocene…) every museum uses, shown so you can see which chapter of Earth's history this lineage lived in. This lineage is a young one, so the strip is zoomed in to epochs — the finer subdivisions inside a period. The orange marker is the DNA clock: DNA accumulates mutations at a roughly steady rate, so comparing this species' DNA with its relatives estimates when the lineage split off — independently of any fossil.
DNA clock origin
08Occurrence & distribution
Record type5 757 records
Wild obs. + sensor4 123
Museum / vouchered1 575
Other59
Range
Area of Occupancy AOO16 768 km²
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Coordinate accuracy58% within 1 km
≤100 m 1 238≤1 km 632≤10 km 1 296>10 km 79
3 245 georeferenced · 878 without coordinates
Open the mapobservation + sensor4 123
Museum / Voucheredphysical evidence
Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.
Coordinate accuracy46% within 1 km
≤100 m 137≤1 km 272≤10 km 392>10 km 80
881 georeferenced · 694 without coordinates
Open the institutions mapphysical evidence1 575
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
10Collections & institutions
Holding institutions47 of 92 geolocated
Institutions and collections holding physical, vouchered specimens of this species — click a row to fly to it on the map.
Institution
Specimens
Helsinki, FI
254
Olocation not on record
160
SLU Artdatabankenlocation not on record
99
Bronx, US
89
Tartu, EE
76
Toronto, CA
62
Joensuu, FI
53
Jyväskylä, FI
27
Chicago, US
26
Copenhagen, DK
26
Zürich, CH
26
Philadelphia, US
25
Université de Montréal Biodiversity Centrelocation not on record
21
Kuopio, FI
20
Uppsala, SE
19
GJOlocation not on record
17
Cincinnati, US
17
Karlsruhe, DE
16
WU-MYClocation not on record
15
Görlitz, DE
14
Kew, GB
14
Salzburg, AT
11
Museo civico di Storia naturale Giacomo Doria di Genova | Giacomo Doria Natural History Museum in Genoalocation not on record
10
Metsähallituslocation not on record
10
Oulu, FI
10
TROMlocation not on record
9
Trondheim, NO
9
Adam Mickiewicz University in Poznańlocation not on record
9
Denver, US
8
Universidade de Lisboa, Museu Bocagelocation not on record
8
Umeå Universitylocation not on record
8
Mlocation not on record
8
University of the Basque Country (UPV/EHU)location not on record
7
Tomioka, JP
7
WTUlocation not on record
6
Davis and Elkins Collegelocation not on record
6
LDlocation not on record
6
Blacksburg, US
6
TENN-Flocation not on record
5
San Sebastián, ES
5
MeiseBGlocation not on record
5
Vitoria, ES
4
St. Paul, US
4
Auckland, NZ
4
Kensington, AU
4
nsnflocation not on record
4
Catholic University of Pekinglocation not on record
4
Helsinki, FI
4
ILLSlocation not on record
4
BioFokuslocation not on record
4
Museum Ludovicae Ulricae, Zoology Institute of the University of Uppsalalocation not on record
3
DPIlocation not on record
3
MAlocation not on record
3
Ann Arbor, US
3
BDBClocation not on record
3
Staten Island, US
3
Göteborg, SE
3
Zapopan, MX
3
National Institute of Biological Resourceslocation not on record
3
UNINE:NEUlocation not on record
3
Acadia Universitylocation not on record
3
McWane Science Centerlocation not on record
3
IPA/SPlocation not on record
3
Helsinki, FI
3
Turku, FI
2
National Mushroom Centre, Department of Agriculture, Ministry of Agriculture and Livestock, Bhutanlocation not on record
2
Canberra, AU
2
Durham, US
2
Rovaniemi, FI
2
Uniwersytet Łódzkilocation not on record
2
Durango, MX
2
Bardejov, SK
2
Stockholm, SE
1
HabitatVisionlocation not on record
1
State University of New Yorklocation not on record
1
Vancouver, CA
1
Fungario QCAM de la Pontificia Universidad Católica del Ecuadorlocation not on record
1
Personal Herbarium of Paula DeSantolocation not on record
1
Salamanca, ES
1
FLASlocation not on record
1
PHlocation not on record
1
Bando, JP
1
The University of Arizonalocation not on record
1
Mexico City, MX
1
Gijón, ES
1
TUR-Alocation not on record
1
CA
1
Pullman, US
1
Museo Entomologico de Leonlocation not on record
1
Senckenberg Gesellschaft für Naturforschung: Senckenberg Forschungsinstitut und Naturmuseumlocation not on record
1
European Distributed Institute of Taxonomy (EDIT)location not on record
1
Slovenian Forestry Institutelocation not on record
1
92 institutions · 1 343 of 1 575 vouchered records shown · 231 without an institution code
09Environmental DNA23 detections
Where the DNA of Trametes pubescens was picked up in samples of water, soil or air — nobody saw the organism, only its DNA left behind. A trace is a clue that the species was near, not a confirmed sighting.
Signal
Detections DNA found23
Studies independent surveys3
Countries5
Signal confidence: moderateweighed across independent studies, places & mapped detections
Where its DNA was found
0 of 23 detections have coordinates
Open the map5 countries0
On dead deciduous wood (Alnus) in mixed Pice…
How strong is each trace?
DNA read depthRead counts were not reported for this species — the map shows presence only, not how strong each trace was.
Modelled climatemodelled
−15°Ctemperature across detection sites+40°C
Temperature median8.30 °C 6.00–10.5
Seasonal swing summer↔winter22.7 °C
Max temp (day)11.8 °C 9.50–13.3
Min temp (night)4.40 °C 2.30–7.70
Precipitation66.0 mm/mo 59.1–100
Air humidity63.7 % 61.1–65.1
Moisture balance10.6 mm/mo -3.20–45.2
Vapour deficit443 Pa 363–494
Wind speed3.00 m/s 2.20–3.80
Cloud cover52.3 % 43.1–60.4
CHELSA 1981–2010, ~9 km grid, at location & month of 5 detection points · median with p10–p90 · reflects where sampling happened, not only the true niche
How to read this: each dot is one detection of this species' DNA in an environmental sample. The confidence meter weighs how many independent studies and places back up the signal — one detection in one study is a hint; many across several studies is solid. Records dated before 2008 (when eDNA methods began) are treated as likely mislabeled and left off the map.