Simarouba amara
Aubl. · speciesAt a glance
Sources13 archives
Databases and archives Simarouba amara's data was compiled from.
WikipediaWikimedia Foundation6 languages↗
BioWikiNetmultilingual Wikipediamultilingual↗
GBIFGlobal Biodiversity Information Facility4 138 records↗
ENAEuropean Nucleotide Archive · EMBL-EBI26 eDNA detections↗
BOLD SystemsCentre for Biodiversity Genomics33 specimens↗
NCBIUS National Library of Medicinesequences↗
LOTUSNatural Products (Wikidata)compounds↗
NPASSNat. Product Activity & Species Sourcecompounds↗
GRIN TaxonomyUSDA-ARSdistribution & uses↗
Open Tree of LifeOpenTreephylogeny backbone↗
CCDBChromosome Counts DB · Tel Aviv U.genome & karyotype↗
GoaTGenomes on a Tree · Sangergenome & karyotype↗
PloiDBPloidy Databasegenome & karyotypeEvery layer below draws on the sources above — open one to explore it, or use ← → to move between tabs.
Simarouba amara is a species of tree in the family Simaroubaceae, found in the rainforests and savannahs of South and Central America and the Caribbean. It was first described by Aubl. in French Guiana in 1775 and is one of six species of Simarouba. The tree is evergreen, but produces a new set of leaves once a year. It requires relatively high levels of light to grow and grows rapidly in these conditions, but lives for a relatively short time. In Panama, it flowers during the dry season in February and March, whereas in Costa Rica, where there is no dry season it flowers later, between March and July. As the species is dioecious, the trees are either male or female and only produce male or female flowers. The small yellow flowers are thought to be pollinated by insects, the resulting fruits are dispersed by animals including monkeys, birds and fruit-eating bats and the seeds are also dispersed by leaf cutter ants. Simarouba amara has been studied extensively by scientists in an attempt to understand the tree and also to gain a better understanding of the ecology of the rainforest in general. Many of these studies were conducted on Barro Colorado Island in Panama or at La Selva Biological Station in Costa Rica. Of particular interest is how it competes with other species and with individuals of the same species at different stages in its life cycle. The seedlings are normally limited by the amount of light and nutrients found where they are growing and the saplings are considered relatively light demanding compared to other species. Young individuals are more likely to survive when they grow further away from their parents and when there are few other individuals growing near to them, which may be due to them being able to escape diseases. Plant physiologists have investigated how the leaves of the tree differ depending on their location in the forest canopy finding they are thicker in the canopy and thinner in the understory. They have also measured how the water potential of their leaves changes and when their stomata open and close during the day; the findings suggest that rather than closing their stomata to control water loss, it is controlled by the leaf area instead. Population geneticists have examined the way in which its genes vary, at both the local scale and across its range using microsatellites. It is genetically diverse, indicating gene flow occurs between populations and seeds can be dispersed up to 1 km. The leaves of S. amara are eaten by several species of caterpillar, particularly those in the genus Atteva. Several species of termite and ants live on or around the tree and lianas and epiphytes grow on the tree. The bark of S. amara has been used by people in its range to treat dysentery and diarrhea, as well as other diseases, and was also exported to Europe in the eighteenth century to treat these illnesses. A number of compounds have since been isolated from the bark and have been shown to have antimicrobial effects. Local people use the wood of the tree for various purposes and it is also grown in plantations and harvested for its timber, some of which is exported.
No narrative description available for this taxon yet.
Size & morphology14
Life cycle & reproduction5
Diet & foraging1
Habitat & environment12
Physiology & chemistry11
Other traits1
Compounds documented for Simarouba amara across natural-product and food-composition databases — not just the ~150 nutrients on a classic label ("nutritional dark matter").
Compound class profile5 classes
Documented compounds45 total
| Compound | Class | Amount | Source |
|---|---|---|---|
| (+)-Heliotrine | present | NPASS | |
| (-)-Lasiocarpine | present | NPASS | |
| (13alpha,14beta,17alpha)-Lanosta-7,24-dien-3-one | present | LOTUS | |
| (1S,2R,5R,11R,12R,15R)-2,6,6,11-tetramethyl-7-oxapentacyclo[13.3.1.01,15.02,12.05,11]nonadec-9-ene-3,8-dione | present | LOTUS | |
| (1S,2R,5R,11R,12R,15R,16R)-16-[(2S)-2-[(2R)-3,3-dimethyloxiran-2-yl]-2,3-dihydrofuran-4-yl]-2,6,6,11-tetramethyl-7-oxapentacyclo[13.3.1.01,15.02,12.05,11]nonadec-9-ene-3,8-dione | present | LOTUS | |
| (1S,8R)-1-(hydroxymethyl)-2,3,5,6,7,8-hexahydropyrrolizin-1-ol | present | NPASS | |
| (2S)-6-methyl-2-[(5S,9R,10R,13S,14S,17S)-4,4,10,13,14-pentamethyl-3-oxo-1,2,5,6,9,11,12,15,16,17-decahydrocyclopenta[a]phenanthren-17-yl]hept-5-enal | present | LOTUS | |
| (4,5,17-Trihydroxy-6,14,18-trimethyl-9,16-dioxo-3,10-dioxapentacyclo[9.8.0.01,7.04,19.013,18]nonadec-14-en-8-yl) 2-hydroxy-2-methylbutanoate | present | LOTUS | |
| (5R,10S,13S,14S,17S)-17-[(2R,4S)-4-[(2S)-3,3-dimethyloxiran-2-yl]-4-hydroxybutan-2-yl]-4,4,10,13,14-pentamethyl-1,2,5,6,7,11,12,15,16,17-decahydrocyclopenta[a]phenanthren-3-one | present | LOTUS | |
| (5R,9S,10R,13S,14S,17S)-17-[(2R,4R)-4-[(2S)-3,3-dimethyloxiran-2-yl]-4-hydroxybutan-2-yl]-4,4,10,13,14-pentamethyl-1,2,5,6,9,11,12,15,16,17-decahydrocyclopenta[a]phenanthren-3-one | present | LOTUS |
A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Simarouba amara has left across the world's sequence archives.
At a glance
★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.
The complete instruction manual Simarouba amara carries — its genome. We read it from three angles — how big it is, how the DNA is packed into chromosomes, and how completely it has been sequenced — and explain how to read each value as you go.
Genome sizehow big the whole instruction manual is
Measured in base pairs (bp) — the individual letters of DNA (human ≈ 3.2 Gb, a bacterium a few million). The chart places this genome on a logarithmic scale — each step to the right is ten times bigger — among reference organisms. Across species a bigger genome loosely tracks with larger cells, slower growth and lower-energy lifestyles (powered flight favours small genomes) — yet it does not imply more genes or a more advanced organism (the long-standing C-value paradox).
Chromosomes & ploidyhow the DNA is packaged
2n is the full chromosome count in a normal body cell; n is a gamete (egg or sperm), which carries half. Ploidy is how many complete chromosome sets each cell holds — 2× (diploid) is typical for animals, while higher levels (polyploidy) are common in plants. Click any value below to see the underlying records and sources.
n 161×CCDB · book-ipcn73-74
diploid inferred1×PloiDB · family-scale
Sequencing statusassembly quality — how far to trust these numbers
Assembly level tells you how finished the sequence is — from fragmented contigs, through scaffolds, up to a full chromosome-level assembly. BUSCO % estimates completeness: the share of genes expected to be present that were actually found. These describe the data quality, not the organism.
Record type4 138 records
Origin
Range
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Museum / Voucheredphysical evidence
Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Holding institutions62 of 164 geolocated
Institutions and collections holding physical, vouchered specimens of this species — click a row to fly to it on the map.
| Institution | Specimens |
|---|---|
| Saint Louis, US | 321 |
| Bronx, US | 301 |
| USP-IBlocation not on record | 85 |
| Laboratorio de Ictiologialocation not on record | 82 |
| Chicago, US | 81 |
| JBRJlocation not on record | 77 |
| University of Stellenboschlocation not on record | 72 |
| Instituto Nacional de Pesquisas da Amazônia (INPA)location not on record | 56 |
| Instituto Amazónico de Investigaciones Científicas - SINCHIlocation not on record | 53 |
| UFBAlocation not on record | 50 |
| National Biodiversity Institute, Costa Ricalocation not on record | 49 |
| Feira de Santana, BR | 49 |
| ASUlocation not on record | 45 |
| La Paz, BO | 40 |
| San Jose State University, Museum of Birds and Mammalslocation not on record | 37 |
| León, NI | 37 |
| UFRPElocation not on record | 35 |
| CEPLAClocation not on record | 35 |
| Museu Paraense Emílio Goeldilocation not on record | 35 |
| Instituto de Investigación de Recursos Biológicos Alexander von Humboldt (IAvH)location not on record | 30 |
| Santa Cruz de la Sierra, BO | 29 |
| UnBlocation not on record | 28 |
| Chaguaramas, TT | 26 |
| Cenargenlocation not on record | 23 |
| Departamento de Sistematica e Ecologialocation not on record | 23 |
| MAlocation not on record | 22 |
| Kew, GB | 20 |
| Brasília, BR | 20 |
| Brasília, BR | 19 |
| Mexico City, MX | 16 |
| Herbario Selva Central Oxapampa - estación biológica del Jardín Botánico de Missourilocation not on record | 15 |
| INMAlocation not on record | 14 |
| Aarhus, DK | 14 |
| Porto Velho, BR | 13 |
| Area de Conservacion Guanacastelocation not on record | 13 |
| Embrapa Amazônia Oriental, Ministry of Agriculturelocation not on record | 12 |
| UFESlocation not on record | 11 |
| UNICAMPlocation not on record | 11 |
| IECOSlocation not on record | 11 |
| Bogotá, D.C., CO | 11 |
| Santarém, BR | 11 |
| UEGlocation not on record | 11 |
| Universidad Tecnológica del Chocó (UTCH)location not on record | 11 |
| HUAlocation not on record | 10 |
| Salvador, BR | 10 |
| Ilhéus, BR | 9 |
| Universiti Sains Malaysialocation not on record | 9 |
| UNIVASFlocation not on record | 9 |
| Masindi, UG | 9 |
| Instituto para la Investigación y la Preservación del Patrimonio Cultural y Natural del Valle del Cauca - INCIVAlocation not on record | 8 |
| QCNElocation not on record | 8 |
| Berlin, DE | 8 |
| Universidad Autónoma de Madridlocation not on record | 8 |
| Xiamen, CN | 8 |
| Empresa Pernambucana de Pesquisa Agropecuária, IPAlocation not on record | 7 |
| UNEMATlocation not on record | 7 |
| UEPAlocation not on record | 7 |
| Universidade Federal do Ceara, Departamento de Biologialocation not on record | 7 |
| Federal University of Espírito Santolocation not on record | 7 |
| Cuiabá, BR | 7 |
| UFPElocation not on record | 7 |
| Universidade Federal do Espírito Santolocation not on record | 7 |
| Universidad Nacional de Colombia (UNAL)location not on record | 7 |
| Institut fur Allgemeine Mikrobiologielocation not on record | 7 |
| Universidad Católica de Oriente (UCO)location not on record | 6 |
| St. Augustine, TT | 6 |
| San José, CR | 6 |
| IPA/SPlocation not on record | 5 |
| UFMGlocation not on record | 5 |
| Universidad de Antioquia (UdeA)location not on record | 5 |
| Jardín Botánico de Cartagena "Guillermo Piñeres" (JBC)location not on record | 5 |
| UNESP-FCAlocation not on record | 5 |
| Fort Worth, US | 4 |
| CJBGlocation not on record | 4 |
| Fredericksburg, US | 4 |
| ITVlocation not on record | 4 |
| Cochabamba, BO | 4 |
| Quito, EC | 4 |
| Stockholm, SE | 4 |
| Universidade de São Paulolocation not on record | 4 |
| Istituto Agrario Castelnuovolocation not on record | 4 |
| Collections de la Faculte des Sciences de Lyonlocation not on record | 4 |
| Universidade Paulistalocation not on record | 4 |
| CPATSAlocation not on record | 4 |
| Durango, MX | 4 |
| URCAlocation not on record | 3 |
| Florida Museum of Natural History- Zoology, Paleontology & Paleobotanylocation not on record | 3 |
| UFMSlocation not on record | 3 |
| Miami, US | 3 |
| arosemena tola, EC | 3 |
| Loja, EC | 3 |
| Université de Bordeauxlocation not on record | 3 |
| HUENFlocation not on record | 3 |
| Fortaleza, BR | 3 |
| UEMAlocation not on record | 3 |
| HUT Culture Collectionlocation not on record | 3 |
| Altos de Pipe, VE | 3 |
| Sri Ramaswamy Memorial Universitylocation not on record | 3 |
| Provincia di Livornolocation not on record | 2 |
| HACAMlocation not on record | 2 |
| Blumenau, BR | 2 |
| Fundación Jardín Botánico Joaquín Antonio Uribe de Medellínlocation not on record | 2 |
| Universidad Nacional Agraria La Molina, Herbariolocation not on record | 2 |
| Mérida, MX | 2 |
| UFVJMlocation not on record | 2 |
| Centro de Pesquisas Agropecuarias do Tropico Umidolocation not on record | 2 |
| Universidad de la Amazonia (UniAmazonia)location not on record | 2 |
| Antiguo Cuscatlán, SV | 2 |
| South Kensington, GB | 2 |
| Toronto, CA | 2 |
| Pontificia Universidad Javeriana (PUJ)location not on record | 2 |
| Universidade Federal de Sergipe (UFS)location not on record | 2 |
| UFPRlocation not on record | 2 |
| Ivano-Frankivsk, UA | 2 |
| Tapachula, MX | 2 |
| Universidad de La Salle (La Salle)location not on record | 2 |
| Durham, US | 2 |
| Museu Nacional, Universidade Federal do Rio de Janeirolocation not on record | 1 |
| Dublin, IE | 1 |
| Uppsala, SE | 1 |
| Cambridge, US | 1 |
| Universidad de los Andes (UniAndes)location not on record | 1 |
| Universidad de Caldas (UCaldas)location not on record | 1 |
| Wlocation not on record | 1 |
| Universidade Federal do Rio Grande do Nortelocation not on record | 1 |
| Tampa, US | 1 |
| Durham, US | 1 |
| Universidad del Quindío (UniQuindío)location not on record | 1 |
| PORTlocation not on record | 1 |
| Cambridge, US | 1 |
| UNESP-IBILCElocation not on record | 1 |
| Universidad de Nariño (UdeNar)location not on record | 1 |
| Herbario de la Universidad Tecnológica Indoaméricalocation not on record | 1 |
| Chongqing Museumlocation not on record | 1 |
| Museu Paraense Emilio Goeldilocation not on record | 1 |
| Campo Mourão, BR | 1 |
| Arequipa, PE | 1 |
| Uniwersytet Jagiellońskilocation not on record | 1 |
| St. Paul, US | 1 |
| Göteborg, SE | 1 |
| Universidad Industrial de Santander (UIS)location not on record | 1 |
| Kunming, CN | 1 |
| Departamento de Geologia, Universidad de Chilelocation not on record | 1 |
| Tuxtla Gutiérrez, MX | 1 |
| Juriquilla, MX | 1 |
| Corrientes, AR | 1 |
| Managua, NI | 1 |
| Provincial Museum of Albertalocation not on record | 1 |
| Lima, PE | 1 |
| Tuxtla Gutiérrez, MX | 1 |
| FPMZBlocation not on record | 1 |
| JBPlocation not on record | 1 |
| Burlington, US | 1 |
| Corporación Autónoma Regional Para la Defensa de la Meseta de Bucaramanga (CDMB)location not on record | 1 |
| UNITINSlocation not on record | 1 |
| Montpellier, FR | 1 |
| UNIVILLElocation not on record | 1 |
| UNESP-RClocation not on record | 1 |
| MeiseBGlocation not on record | 1 |
| UFERSAlocation not on record | 1 |
| UESBlocation not on record | 1 |
| UTFPR-CPlocation not on record | 1 |
| Universidade Federal de Goiáslocation not on record | 1 |
| Universidade Federal de Mato Grosso do Sul, Campus do Pantanallocation not on record | 1 |
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
Where the DNA of Simarouba amara was picked up in samples of water, soil or air — nobody saw the organism, only its DNA left behind. A trace is a clue that the species was near, not a confirmed sighting.
Signal
Where its DNA was found
How strong is each trace?
Modelled climatemodelled
How to read this: each dot is one detection of this species' DNA in an environmental sample. The confidence meter weighs how many independent studies and places back up the signal — one detection in one study is a hint; many across several studies is solid. Records dated before 2008 (when eDNA methods began) are treated as likely mislabeled and left off the map.