Puccinia graminis
Pers. · speciesAt a glance
Sources10 archives
Databases and archives Puccinia graminis's data was compiled from.
WikipediaWikimedia Foundation12 languages↗
BioWikiNetmultilingual Wikipediamultilingual↗
GBIFGlobal Biodiversity Information Facility9 586 records↗
ENAEuropean Nucleotide Archive · EMBL-EBI128 eDNA detections↗
BOLD SystemsCentre for Biodiversity Genomics253 specimens↗
NCBIUS National Library of Medicinesequences↗
LOTUSNatural Products (Wikidata)compounds↗
Open Tree of LifeOpenTreephylogeny backbone↗
Catalogue of LifeCOLtaxonomy↗
GLoBIGlobal Biotic Interactionsbiotic interactions↗Every layer below draws on the sources above — open one to explore it, or use ← → to move between tabs.
Ug99 is a lineage of wheat stem rust (Puccinia graminis f. sp. tritici), which is present in wheat fields in several countries in Africa and the Middle East and is predicted to spread rapidly through these regions and possibly further afield, potentially causing a wheat production disaster that would affect food security worldwide. In 2005 the noted green revolution pioneer Norman Borlaug brought great attention to the problem, and most subsequent efforts can be traced to his advocacy. It can cause up to 100% crop losses and is virulent against many resistance genes which have previously protected wheat against stem rust. Although Ug99-resistant varieties of wheat do exist, a screen of 200,000 wheat varieties used in 22 African and Asian countries found that only 5-10% of the area of wheat grown in these countries consisted of varieties with adequate resistance. The original race of Ug99, which is designated as 'TTKSK' under the North American nomenclature system, was first detected in Uganda in 1998 and first characterised in 1999 (hence the name Ug99) and has since been detected in Kenya, Ethiopia, Eritrea, Sudan, Yemen, Iran, Tanzania, Mozambique, Zimbabwe, South Africa, and Egypt. There are now 15 known races of Ug99. They are all closely related and are believed to have evolved from a common ancestor, but differ in their virulence/avirulence profiles and the countries in which they have been detected.
No narrative description available for this taxon yet.
No structured trait data for this taxon yet.
Compounds documented for Puccinia graminis across natural-product and food-composition databases — not just the ~150 nutrients on a classic label ("nutritional dark matter").
Compound class profile1 class
Documented compounds12 total
| Compound | Class | Amount | Source |
|---|---|---|---|
| (2S)-2-ammonio-3-(1H-imidazol-4-yl)propanoate | present | LOTUS | |
| (2S)-2-ammonio-3-(4-hydroxyphenyl)propanoate | present | LOTUS | |
| (2S,3S)-2-ammonio-3-methylpentanoate | present | LOTUS | |
| (R)-cysteate | present | LOTUS | |
| 4-aminobutanoate | present | LOTUS | |
| Allothreonine, L- | present | LOTUS | |
| Arginine | present | LOTUS | |
| d,l-Serine | present | LOTUS | |
| epsilon-Polylysine | present | LOTUS | |
| L-Aspartic acid | present | LOTUS |
A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Puccinia graminis has left across the world's sequence archives.
At a glance
★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.
Besides the big genome in the nucleus, cells carry a small, circular loop of DNA inside the cell's energy factories — the mitochondria. It is inherited almost only from the mother and is a leftover from ancient bacteria that moved into the cell. The mitochondrial markers above (ND*, COX, CYTB…) are read from exactly this loop. Outer ring = one strand, inner ring = the other.
The complete instruction manual Puccinia graminis carries — its genome. We read it from three angles — how big it is, how the DNA is packed into chromosomes, and how completely it has been sequenced — and explain how to read each value as you go.
Genome sizehow big the whole instruction manual is
Measured in base pairs (bp) — the individual letters of DNA (human ≈ 3.2 Gb, a bacterium a few million). The chart places this genome on a logarithmic scale — each step to the right is ten times bigger — among reference organisms. Across species a bigger genome loosely tracks with larger cells, slower growth and lower-energy lifestyles (powered flight favours small genomes) — yet it does not imply more genes or a more advanced organism (the long-standing C-value paradox).
Sequencing statusassembly quality — how far to trust these numbers
Assembly level tells you how finished the sequence is — from fragmented contigs, through scaffolds, up to a full chromosome-level assembly. BUSCO % estimates completeness: the share of genes expected to be present that were actually found. These describe the data quality, not the organism.
Record type9 586 records
Origin
Range
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Museum / Voucheredphysical evidence
Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Holding institutions40 of 81 geolocated
Institutions and collections holding physical, vouchered specimens of this species — click a row to fly to it on the map.
| Institution | Specimens |
|---|---|
| Bernard Price Institute for Palaeontological Researchlocation not on record | 2 306 |
| ILLSlocation not on record | 1 026 |
| Bronx, US | 448 |
| Uppsala, SE | 447 |
| Görlitz, DE | 426 |
| Madison, US | 407 |
| Lincoln, US | 318 |
| Catholic University of Pekinglocation not on record | 294 |
| St. Paul, US | 264 |
| Pullman, US | 254 |
| Karlsruhe, DE | 245 |
| Auckland, NZ | 217 |
| Helsinki, FI | 191 |
| Champaign, US | 139 |
| McWane Science Centerlocation not on record | 127 |
| Tartu, EE | 126 |
| Chicago, US | 118 |
| LDlocation not on record | 116 |
| Chapel Hill, US | 98 |
| Brown Universitylocation not on record | 78 |
| FLASlocation not on record | 56 |
| DPIlocation not on record | 44 |
| TENN-Flocation not on record | 42 |
| Museo Entomologico de Leonlocation not on record | 42 |
| PHlocation not on record | 36 |
| Olocation not on record | 33 |
| Toronto, CA | 27 |
| WU-MYClocation not on record | 27 |
| Kensington, AU | 23 |
| Ann Arbor, US | 20 |
| Cincinnati, US | 19 |
| Stockholm, SE | 19 |
| Baton Rouge, US | 16 |
| MAlocation not on record | 15 |
| GZUlocation not on record | 11 |
| Berlin, DE | 10 |
| Mlocation not on record | 10 |
| Grupo Actinomicetales Merida Facultad de Medicinalocation not on record | 10 |
| SLU Artdatabankenlocation not on record | 10 |
| Université de Montréal Biodiversity Centrelocation not on record | 9 |
| Vancouver, CA | 9 |
| Bando, JP | 8 |
| Academy of Sciences of the Republic of Uzbekistanlocation not on record | 8 |
| CA | 8 |
| MeiseBGlocation not on record | 8 |
| Kew, GB | 7 |
| TROMlocation not on record | 7 |
| Copenhagen, DK | 7 |
| GJOlocation not on record | 5 |
| Laramie, US | 5 |
| Clemson, US | 4 |
| Hirosaki Universitylocation not on record | 4 |
| Trondheim, NO | 4 |
| Adam Mickiewicz University in Poznańlocation not on record | 4 |
| Zürich, CH | 4 |
| Uniwersytet Marii Curie-Skłodowskiejlocation not on record | 4 |
| University of Tennessee at Chattanoogalocation not on record | 4 |
| Institute of Botany of the Academy of Sciences of the Republic of Uzbekistanlocation not on record | 4 |
| Oskarshamn, SE | 3 |
| Logan, US | 2 |
| Hobart, AU | 2 |
| Durango, MX | 2 |
| Porvoo, FI | 1 |
| California State University, East Baylocation not on record | 1 |
| UFPElocation not on record | 1 |
| nsnflocation not on record | 1 |
| European Distributed Institute of Taxonomy (EDIT)location not on record | 1 |
| Adelaide, AU | 1 |
| Vitoria, ES | 1 |
| JA-CAGPDS-CAMlocation not on record | 1 |
| Canadian Department of Agriculturelocation not on record | 1 |
| Uniwersytet Łódzkilocation not on record | 1 |
| UAclocation not on record | 1 |
| Acadia Universitylocation not on record | 1 |
| Provincia di Livornolocation not on record | 1 |
| IFR-DNFlocation not on record | 1 |
| Musée des Confluenceslocation not on record | 1 |
| Salvador, BR | 1 |
| Universidade de Lisboa, Museu Bocagelocation not on record | 1 |
| Canberra, AU | 1 |
| Durham, US | 1 |
Where the DNA of Puccinia graminis was picked up in samples of water, soil or air — nobody saw the organism, only its DNA left behind. A trace is a clue that the species was near, not a confirmed sighting.
Signal
Where its DNA was found
How strong is each trace?
Modelled climatemodelled
How to read this: each dot is one detection of this species' DNA in an environmental sample. The confidence meter weighs how many independent studies and places back up the signal — one detection in one study is a hint; many across several studies is solid. Records dated before 2008 (when eDNA methods began) are treated as likely mislabeled and left off the map.