Phytolacca dioica
speciesAt a glance
Sources14 archives
Databases and archives Phytolacca dioica's data was compiled from.
WikipediaWikimedia Foundation8 languages↗
BioWikiNetmultilingual Wikipediamultilingual↗
GBIFGlobal Biodiversity Information Facility6 774 records↗
ENAEuropean Nucleotide Archive · EMBL-EBI9 eDNA detections↗
BOLD SystemsCentre for Biodiversity Genomics15 specimens↗
NCBIUS National Library of Medicinesequences↗
LOTUSNatural Products (Wikidata)compounds↗
NPASSNat. Product Activity & Species Sourcecompounds↗
GRIN TaxonomyUSDA-ARSdistribution & uses↗
Open Tree of LifeOpenTreephylogeny backbone↗
CCDBChromosome Counts DB · Tel Aviv U.genome & karyotype↗
GoaTGenomes on a Tree · Sangergenome & karyotype↗
PloiDBPloidy Databasegenome & karyotype
GLoBIGlobal Biotic Interactionsbiotic interactions↗Every layer below draws on the sources above — open one to explore it, or use ← → to move between tabs.
Phytolacca dioica, commonly known as ombú, is a massive evergreen tree native to the Pampa of South America. As its specific epithet suggests, it is dioecious, with male and female flowers on separate plants. It has an umbrella-like canopy that spreads to a diameter of 12 to 15 meters (40 to 50 feet) and can attain a height of 12 to 18 meters (40 to 60 feet). Because it is derived from herbaceous ancestors, its trunk consists of anomalous secondary thickening rather than true wood. As a result, the ombú grows fast but its wood is soft and spongy enough to be cut with a knife. These properties have led it to be used in the art of bonsai, as it is easily manipulated to create the desired effect. Since the sap is poisonous, the ombú is not grazed by cattle and is immune to locusts and other pests. For similar reasons, the leaves are sometimes used as a laxative or purgative. It is a symbol of Uruguay and Argentina, and of gaucho culture, as its canopy is quite distinguishable from afar and provides comfort and shelter from sun and rain. This tree is categorized in the same genus as the North American pokeweed. The species is also cultivated in Southern California as a shade tree. Ombú has been declared as a minor invasive species (category 3) in South Africa, where it is widely planted.Glen, Hugh & Van Wyk, Braam (2016) Guide to Trees introduced into South Africa. pp.232-233. Struik Nature, Cape Town
No narrative description available for this taxon yet.
Size & morphology18
Life cycle & reproduction13
Diet & foraging1
Habitat & environment15
Physiology & chemistry3
Other traits2
Compounds documented for Phytolacca dioica across natural-product and food-composition databases — not just the ~150 nutrients on a classic label ("nutritional dark matter").
Compound class profile3 classes
Documented compounds17 total
| Compound | Class | Amount | Source |
|---|---|---|---|
| (2S,3R,4S,5R)-2-[[(1S,2S,5R,7S,10R,12S,15R,16R,17S,18R,21R,22R,24S)-21,22-dihydroxy-1,6,6,15,17,20,20-heptamethyl-19,23-dioxaheptacyclo[13.10.0.02,12.05,10.010,12.016,24.018,22]pentacosan-7-yl]oxy]oxane-3,4,5-triol | present | NPASS | |
| ACAYJUFAIJJELS-SDQBBNPISA-N | present | NPASS | |
| beta-Sitosterol | present | NPASS | |
| DTEPMSNVPQVQDW-UNRATHGWSA-N | present | NPASS | |
| Esculentoside S | present | LOTUS | |
| FRLGNHGNKSPOGU-SKRNURLDSA-N | present | NPASS | |
| FRLGNHGNKSPOGU-ZXQUZLTDSA-N | present | NPASS | |
| HOEACCWXJIUNFZ-PJDTTXJDSA-N | present | NPASS | |
| LCIQFCBYTOZSAR-BJSURHQRSA-N | present | NPASS | |
| LCIQFCBYTOZSAR-WQHLBGDNSA-N | present | NPASS |
A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Phytolacca dioica has left across the world's sequence archives.
At a glance
★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.
The complete instruction manual Phytolacca dioica carries — its genome. We read it from three angles — how big it is, how the DNA is packed into chromosomes, and how completely it has been sequenced — and explain how to read each value as you go.
Genome sizehow big the whole instruction manual is
Measured in base pairs (bp) — the individual letters of DNA (human ≈ 3.2 Gb, a bacterium a few million). The chart places this genome on a logarithmic scale — each step to the right is ten times bigger — among reference organisms. Across species a bigger genome loosely tracks with larger cells, slower growth and lower-energy lifestyles (powered flight favours small genomes) — yet it does not imply more genes or a more advanced organism (the long-standing C-value paradox).
Chromosomes & ploidyhow the DNA is packaged
2n is the full chromosome count in a normal body cell; n is a gamete (egg or sperm), which carries half. Ploidy is how many complete chromosome sets each cell holds — 2× (diploid) is typical for animals, while higher levels (polyploidy) are common in plants. Click any value below to see the underlying records and sources.
2n 369×GoaT · Kew Plant DNA C-values Database · CCDB · croinout · CCDB · book-ipcn67-71 +4
tetraploid1×GoaT · Kew Plant DNA C-values Database
polyploid inferred1×PloiDB · genus-scale
Record type6 774 records
Origin
Range
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Museum / Voucheredphysical evidence
Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Holding institutions67 of 145 geolocated
Institutions and collections holding physical, vouchered specimens of this species — click a row to fly to it on the map.
| Institution | Specimens |
|---|---|
| San Jose State University, Museum of Birds and Mammalslocation not on record | 75 |
| Blumenau, BR | 60 |
| Saint Louis, US | 52 |
| Bronx, US | 49 |
| Pretoria, ZA | 35 |
| UTFPR-CPlocation not on record | 22 |
| Auckland, NZ | 21 |
| Ivano-Frankivsk, UA | 20 |
| Loja, EC | 20 |
| Campo Mourão, BR | 19 |
| Brisbane, AU | 18 |
| Durango, MX | 16 |
| Durban, ZA | 16 |
| San Isidro, AR | 15 |
| Cascavel, BR | 15 |
| Centro de Estudios y Colecciones Biológicas para la Conservaciónlocation not on record | 13 |
| UNICAMPlocation not on record | 12 |
| Santa Barbara, US | 11 |
| PUC-RSlocation not on record | 11 |
| Rotorua, NZ | 11 |
| Kew, GB | 11 |
| UFMGlocation not on record | 10 |
| Universidad Nacional de Asunciónlocation not on record | 10 |
| Masindi, UG | 9 |
| UTFPR-DVlocation not on record | 9 |
| Londrina, BR | 9 |
| Istituto Agrario Castelnuovolocation not on record | 9 |
| Córdoba, AR | 8 |
| CEPLAClocation not on record | 8 |
| Universidade Federal de Sergipe (UFS)location not on record | 7 |
| College of the Atlantic, Museumlocation not on record | 7 |
| CICYTEXlocation not on record | 7 |
| Smithfield, AU | 7 |
| JBRJlocation not on record | 7 |
| València, ES | 6 |
| Universidad Nacional de Colombia (UNAL)location not on record | 6 |
| UNESClocation not on record | 6 |
| Paleontological Collectionlocation not on record | 6 |
| University of Stellenboschlocation not on record | 6 |
| FUVATESlocation not on record | 5 |
| IAPlocation not on record | 5 |
| Mount Annan, AU | 5 |
| Maringá, BR | 5 |
| Corrientes, AR | 5 |
| Criciúma, BR | 5 |
| UFPRlocation not on record | 5 |
| Barcelona, ES | 5 |
| Canadian Department of Agriculturelocation not on record | 4 |
| UTPLlocation not on record | 4 |
| ESALQlocation not on record | 4 |
| Cape Town, ZA | 4 |
| Badajoz, ES | 4 |
| UEMlocation not on record | 4 |
| Brasília, BR | 4 |
| Riverside, US | 3 |
| MAlocation not on record | 3 |
| Castelar, AR | 3 |
| Museo Entomologico de Leonlocation not on record | 3 |
| Paris, FR | 3 |
| BIO-UNIPIlocation not on record | 3 |
| Lake Charles, US | 3 |
| UnBlocation not on record | 3 |
| Foz do Iguaçu, BR | 3 |
| IPA/SPlocation not on record | 3 |
| USP-IBlocation not on record | 3 |
| Mexico City, MX | 3 |
| Chapingo, MX | 3 |
| ASUlocation not on record | 3 |
| Museo naturalistico del Frignano Ferruccio Minghellilocation not on record | 3 |
| Miami, US | 3 |
| Austin, US | 2 |
| Honolulu, US | 2 |
| Centro de Pesquisas Agropecuarias do Tropico Umidolocation not on record | 2 |
| UFSClocation not on record | 2 |
| Austin, US | 2 |
| UTFPR-SLlocation not on record | 2 |
| UNIVILLElocation not on record | 2 |
| UNESP, Campus São José Rio Prêtolocation not on record | 2 |
| UNESP-RClocation not on record | 2 |
| Brasília, BR | 2 |
| UNICENTRO-IRATIlocation not on record | 2 |
| Universidade de São Paulolocation not on record | 2 |
| Cenargenlocation not on record | 2 |
| BClocation not on record | 2 |
| Bloomington, US | 2 |
| BDBClocation not on record | 2 |
| Armidale, AU | 2 |
| Museu Paraense Emílio Goeldilocation not on record | 2 |
| FPMZBlocation not on record | 2 |
| South Kensington, GB | 2 |
| Vitoria, ES | 2 |
| Universidade da Região de Joinville - Univillelocation not on record | 2 |
| UIBlocation not on record | 2 |
| Canberra, AU | 2 |
| Xiamen, CN | 2 |
| Mexico City, MX | 2 |
| MeiseBGlocation not on record | 2 |
| LDlocation not on record | 2 |
| INMAlocation not on record | 2 |
| Stellenbosch University, DST- NRF Centre of Excellence for Invasion Biologylocation not on record | 1 |
| UNESP-FCAlocation not on record | 1 |
| CJBGlocation not on record | 1 |
| Salvador, BR | 1 |
| Beijing, CN | 1 |
| Santa Maria, BR | 1 |
| University of Johannesburglocation not on record | 1 |
| South African National Biodiversity Institute, Compton Herbariumlocation not on record | 1 |
| Centro de Ecologia Aplicada del Litoral (CECOAL-CONICET-UNNE)location not on record | 1 |
| UFMSlocation not on record | 1 |
| UEGlocation not on record | 1 |
| UNITINSlocation not on record | 1 |
| Alicante, ES | 1 |
| University of Johannesburg, Department of Botany and Plant Biotechnologylocation not on record | 1 |
| Alexandria Universitylocation not on record | 1 |
| Juriquilla, MX | 1 |
| La Paz, BO | 1 |
| Glocation not on record | 1 |
| GJOlocation not on record | 1 |
| San Diego, US | 1 |
| Mexico City, MX | 1 |
| Florida Museum of Natural History- Zoology, Paleontology & Paleobotanylocation not on record | 1 |
| Moscow State Universitylocation not on record | 1 |
| UFBAlocation not on record | 1 |
| Aarhus, DK | 1 |
| Irvine, US | 1 |
| Stockholm, SE | 1 |
| Wuzhou, CN | 1 |
| QCNElocation not on record | 1 |
| TAFORI-LSRClocation not on record | 1 |
| Santa Cruz, US | 1 |
| Hobart, AU | 1 |
| UNESP-IBILCElocation not on record | 1 |
| Vancouver, CA | 1 |
| National Museums of Kenyalocation not on record | 1 |
| Federal University of Espírito Santolocation not on record | 1 |
| Cruz das Almas, BR | 1 |
| Flagstaff, US | 1 |
| Universidade Federal de Santa Catarinalocation not on record | 1 |
| Feira de Santana, BR | 1 |
| Universidade Federal do Espírito Santolocation not on record | 1 |
| Laboratorio de Ictiologialocation not on record | 1 |
| Universidade Federale do Rio Grande do Sullocation not on record | 1 |
| UFESlocation not on record | 1 |
| Long Beach, US | 1 |
| GHPG$location not on record | 1 |
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
Where the DNA of Phytolacca dioica was picked up in samples of water, soil or air — nobody saw the organism, only its DNA left behind. A trace is a clue that the species was near, not a confirmed sighting.
Signal
Where its DNA was found
How strong is each trace?
Modelled climatemodelled
How to read this: each dot is one detection of this species' DNA in an environmental sample. The confidence meter weighs how many independent studies and places back up the signal — one detection in one study is a hint; many across several studies is solid. Records dated before 2008 (when eDNA methods began) are treated as likely mislabeled and left off the map.