Phakopsora pachyrhizi

Syd. & P.Syd. · species

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Fungi/Basidiomycota/Pucciniomycetes/Pucciniales/Phakopsoraceae/Phakopsora

At a glance

Occurrence records307

Data sources8

Biological traits0

DNA specimens26

eDNA detections26

Sources8 archives

Databases and archives Phakopsora pachyrhizi's data was compiled from.

WikipediaWikimedia Foundation1 languages↗

GBIFGlobal Biodiversity Information Facility307 records↗

ENAEuropean Nucleotide Archive · EMBL-EBI26 eDNA detections↗

BOLD SystemsCentre for Biodiversity Genomics26 specimens↗

NCBIUS National Library of Medicinesequences↗

Open Tree of LifeOpenTreephylogeny backbone↗

GoaTGenomes on a Tree · Sangergenome & karyotype↗

GLoBIGlobal Biotic Interactionsbiotic interactions↗

On this page5 sections

Every layer below draws on the sources above — open one to explore it, or use ← → to move between tabs.

NarrativeWikipediaarticle

Occurrence & distributionGBIF307 records

Environmental DNA1 datasets · 0 countries26 detections

DNA & barcodingBOLD · NCBI26 specimens

Genome at a glanceGoaT · NCBI385 Mbp

01Narrative

Phakopsora pachyrhizi is a plant pathogen. It causes Asian soybean rust.

No narrative description available for this taxon yet.

02Traits & measurements

No structured trait data for this taxon yet.

05DNA & barcoding26 specimens

A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Phakopsora pachyrhizi has left across the world's sequence archives.

At a glance

DNA specimens26

Marker genes2

GenBank sequences10

eDNA detections26

Countries2

The DNA barcodea real sequence read deposited for this species

ITSOK506072.1 ↗207 bpCuba · 2015

ACGT

TGGCAGAATTCAGTGAATCATCAAGTTTTTGAACGCACCTTGCACCTTTTGGTATTCCAAAAGGTACACTGTTTGAGTGTCATGAAATCT …

Phakopsora pachyrhizi strain CPP-1 5.8S ribosomal RNA gene and internal transcribed spacer 2, partial sequence

Marker genes sequenced

★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.

★COI-5P★ITS10

animal barcodefungal barcode

06Genome at a glanceGoaT · NCBI

The complete instruction manual Phakopsora pachyrhizi carries — its genome. We read it from three angles — how big it is, how the DNA is packed into chromosomes, and how completely it has been sequenced — and explain how to read each value as you go.

Genome sizehow big the whole instruction manual is

Genome size385 100 000 bp

Measured in base pairs (bp) — the individual letters of DNA (human ≈ 3.2 Gb, a bacterium a few million). The chart places this genome on a logarithmic scale — each step to the right is ten times bigger — among reference organisms. Across species a bigger genome loosely tracks with larger cells, slower growth and lower-energy lifestyles (powered flight favours small genomes) — yet it does not imply more genes or a more advanced organism (the long-standing C-value paradox).

BACTERIUM Carsonella ruddii0.00016 Gb

FUNGUS0.04 Gb

INSECT0.25 Gb

THIS GENOME Phakopsora pachyrhizi0.39 Gb

HUMAN3.2 Gb

WHEAT17 Gb

FERN Tmesipteris160.45 Gb

Sequencing statusassembly quality — how far to trust these numbers

Assembly level tells you how finished the sequence is — from fragmented contigs, through scaffolds, up to a full chromosome-level assembly. BUSCO % estimates completeness: the share of genes expected to be present that were actually found. These describe the data quality, not the organism.

Assembly levelScaffold

08Occurrence & distribution

Record type307 records

Wild obs. + sensor8

Museum / vouchered299

Range

Area of Occupancy AOO556 km²

Wildobservation + sensor

Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.

Coordinate accuracy100% within 1 km

≤100 m 1

1 georeferenced · 7 without coordinates

Open the mapobservation + sensor8

Museum / Voucheredphysical evidence

Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.

Coordinate accuracy28% within 1 km

≤1 km 5≤10 km 11>10 km 2

18 georeferenced · 281 without coordinates

Open the institutions mapphysical evidence299

Wildobservation + sensor

Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.

10Collections & institutions

Holding institutions8 of 12 geolocated

Institutions and collections holding physical, vouchered specimens of this species — click a row to fly to it on the map.

Institution	Specimens
DPIlocation not on record	196
Bando, JP	35
Bernard Price Institute for Palaeontological Researchlocation not on record	27
Odawara, JP	5
Auckland, NZ	4
Catholic University of Pekinglocation not on record	3
ILLSlocation not on record	3
Helsinki, FI	2
Kensington, AU	1
Kew, GB	1
Chicago, US	1
Karlsruhe, DE	1

12 institutions · 279 of 299 vouchered records shown · 20 without an institution code

09Environmental DNA26 detections

Where the DNA of Phakopsora pachyrhizi was picked up in samples of water, soil or air — nobody saw the organism, only its DNA left behind. A trace is a clue that the species was near, not a confirmed sighting.

Signal

Detections DNA found26

Studies independent surveys1

Signal confidence: weakweighed across independent studies, places & mapped detections

Where its DNA was found

0 of 26 detections have coordinates

Open the map0 countries0

How strong is each trace?

DNA read depthRead counts were not reported for this species — the map shows presence only, not how strong each trace was.

How to read this: each dot is one detection of this species' DNA in an environmental sample. The confidence meter weighs how many independent studies and places back up the signal — one detection in one study is a hint; many across several studies is solid. Records dated before 2008 (when eDNA methods began) are treated as likely mislabeled and left off the map.

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