Compounds documented for Penicillus capitatus across natural-product and food-composition databases — not just the ~150 nutrients on a classic label ("nutritional dark matter").
A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Penicillus capitatus has left across the world's sequence archives.
At a glance
DNA specimens46
Marker genes5
GenBank sequences10
eDNA detections21
Countries8
The DNA barcodea real sequence read deposited for this species
Penicillus capitatus voucher MP08 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence
Marker genes sequenced
★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.
★rbcL8★ITS218StufAUPA
plant barcodefungal barcoderibosomalmarker
06Genome at a glanceGoaT · NCBI
The complete instruction manualPenicillus capitatus carries — its genome. We read it from three angles — how big it is, how the DNA is packed into chromosomes, and how completely it has been sequenced — and explain how to read each value as you go.
Genome sizehow big the whole instruction manual is
Genome size≈27 123 206 bp assembly estimate
Measured in base pairs (bp) — the individual letters of DNA (human ≈ 3.2 Gb, a bacterium a few million). The chart places this genome on a logarithmic scale — each step to the right is ten times bigger — among reference organisms. Across species a bigger genome loosely tracks with larger cells, slower growth and lower-energy lifestyles (powered flight favours small genomes) — yet it does not imply more genes or a more advanced organism (the long-standing C-value paradox).
BACTERIUM Carsonella ruddii0.00016 Gb
THIS GENOME Penicillus capitatus0.03 Gb
FUNGUS0.04 Gb
INSECT0.25 Gb
HUMAN3.2 Gb
WHEAT17 Gb
FERN Tmesipteris160.45 Gb
Sequencing statusassembly quality — how far to trust these numbers
Assembly level tells you how finished the sequence is — from fragmented contigs, through scaffolds, up to a full chromosome-level assembly. BUSCO % estimates completeness: the share of genes expected to be present that were actually found. These describe the data quality, not the organism.
Assembly levelChromosome
Completeness76.2% BUSCO
07Deep time~58.8 Ma lineage
How far back this lineage goes — and how we know. Everything here is measured in Ma, short for “mega-annum”: millions of years ago. The chart reads left to right like a calendar of the Earth, from the deep past on the left to today at the right edgetop to bottom like a core drilled through the Earth, from the deep past at the top down to today at the bottom.
At a glance
DNA clock origin58.8 Ma TimeTree
When this lineage existed
How to read this: the coloured strip along the bottomdown the left is the geological calendar — the standard epochs (Pliocene, Pleistocene…) every museum uses, shown so you can see which chapter of Earth's history this lineage lived in. This lineage is a young one, so the strip is zoomed in to epochs — the finer subdivisions inside a period. The dashed rules marked ✦ are the five great mass extinctions. The orange marker is the DNA clock: DNA accumulates mutations at a roughly steady rate, so comparing this species' DNA with its relatives estimates when the lineage split off — independently of any fossil.
DNA clock originmass extinction
08Occurrence & distribution
Record type1 814 records
Wild obs. + sensor244
Museum / vouchered1 500
Cultivated / captive12
Other58
Origin
Native94
Range
Area of Occupancy AOO3 460 km²
Depth
0–200 m sunlit51
200–1000 m twilight0
1–4 km midnight0
>4 km abyssal0
median 10 m · max 60 m · 51 records with depth
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Coordinate accuracy81% within 1 km
≤100 m 76≤1 km 30≤10 km 16>10 km 9
131 georeferenced · 113 without coordinates
Open the mapobservation + sensor244
Museum / Voucheredphysical evidence
Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.
Coordinate accuracy47% within 1 km
≤100 m 92≤1 km 240≤10 km 323>10 km 56
711 georeferenced · 789 without coordinates
Open the institutions mapphysical evidence1 500
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
Coordinate accuracy
no georeferenced coordinates · 12 records without
Open the mapnot free-living12
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
10Collections & institutions
Holding institutions29 of 64 geolocated
Institutions and collections holding physical, vouchered specimens of this species — click a row to fly to it on the map.
Institution
Specimens
University of Stellenboschlocation not on record
176
Bronx, US
170
Ann Arbor, US
163
Durham, US
83
Tampa, US
79
Mexico City, MX
71
Laboratorio de Ictiologialocation not on record
54
Feira de Santana, BR
53
Chapel Hill, US
37
Durham, US
36
PHlocation not on record
21
Chaguaramas, TT
21
Instituto do Meio Ambientelocation not on record
21
FLASlocation not on record
21
UFBAlocation not on record
18
USP-IBlocation not on record
18
UFRPElocation not on record
16
New Haven, US
14
Salvador, BR
13
Museo Entomologico de Leonlocation not on record
13
LDlocation not on record
11
Institut de Recherche pour le Developpement, New Caledonia, Herbarium of the IRD Noumealocation not on record
10
San Diego, US
10
Burlington, US
8
Ghent University, Herbariumlocation not on record
7
Universiteit Gentlocation not on record
6
McWane Science Centerlocation not on record
6
Ciudad de México, MX
5
Brown Universitylocation not on record
5
Champaign, US
5
Universidad del Magdalena (UniMagdalena)location not on record
5
Minia, EG
5
Florida Museum of Natural History- Zoology, Paleontology & Paleobotanylocation not on record
4
Tapachula, MX
4
South Kensington, GB
4
València, ES
4
Columbia, US
3
Acadia Universitylocation not on record
3
Naturalis Biodiversity Centerlocation not on record
3
WTUlocation not on record
3
Miami, US
3
Clocation not on record
2
Auckland, NZ
2
Centro de Investigación Científica de Yucatán, A. C., Unidad de Ciencias del Agualocation not on record
2
IAPlocation not on record
2
Albany, US
2
IPA/SPlocation not on record
2
Corvallis, US
2
Davis, US
2
Millersville, US
2
Chicago, US
1
Centro Interdisciplinario de Ciencias Marinas, Instituto Politécnico Nacionallocation not on record
1
Empresa Pernambucana de Pesquisa Agropecuária, IPAlocation not on record
1
Adelaide, AU
1
Universidad Industrial de Santander (UIS)location not on record
1
Universidad de La Salle (La Salle)location not on record
1
Departamento de Sistematica e Ecologialocation not on record
1
UERJlocation not on record
1
JBRJlocation not on record
1
James Cook Townsvillelocation not on record
1
Hobart, AU
1
UFPElocation not on record
1
UFSClocation not on record
1
Herbario de la Facultad de Ciencias (FCME)location not on record
1
64 institutions · 1 244 of 1 500 vouchered records shown · 196 without an institution code
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
09Environmental DNA21 detections
Where the DNA of Penicillus capitatus was picked up in samples of water, soil or air — nobody saw the organism, only its DNA left behind. A trace is a clue that the species was near, not a confirmed sighting.
Signal
Detections DNA found21
Studies independent surveys1
Countries7
Signal confidence: weakweighed across independent studies, places & mapped detections
Where its DNA was found
0 of 21 detections have coordinates
Open the map7 countries0
coarse coralline sandseagrass bed
How strong is each trace?
DNA read depthRead counts were not reported for this species — the map shows presence only, not how strong each trace was.
Modelled climatemodelled
−15°Ctemperature across detection sites+40°C
Temperature median24.9 °C 3.90–26.6
Seasonal swing summer↔winter2.60 °C
Max temp (day)25.5 °C 6.90–27.9
Min temp (night)22.9 °C 1.10–24.9
Precipitation77.3 mm/mo 64.2–193
Air humidity65.0 % 59.8–73.6
Moisture balance37.7 mm/mo
Vapour deficit1,106 Pa 267–1,268
Wind speed5.60 m/s
Cloud cover27.2 % 14.2–49.0
CHELSA 1981–2010, ~9 km grid, at location & month of 20 detection points · median with p10–p90 · reflects where sampling happened, not only the true niche
How to read this: each dot is one detection of this species' DNA in an environmental sample. The confidence meter weighs how many independent studies and places back up the signal — one detection in one study is a hint; many across several studies is solid. Records dated before 2008 (when eDNA methods began) are treated as likely mislabeled and left off the map.