Nakaseomyces glabratus

(H.W.Anderson) Sugita & M.Takash. · species

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Fungi/Ascomycota/Saccharomycetes/Saccharomycetales/Saccharomycetaceae/Nakaseomyces

At a glance

Occurrence records38

Data sources8

Biological traits0

DNA specimens203

eDNA detections510

Sources8 archives

Databases and archives Nakaseomyces glabratus's data was compiled from.

WikipediaWikimedia Foundation6 languages↗

BioWikiNetmultilingual Wikipediamultilingual↗

GBIFGlobal Biodiversity Information Facility38 records↗

ENAEuropean Nucleotide Archive · EMBL-EBI510 eDNA detections↗

BOLD SystemsCentre for Biodiversity Genomics203 specimens↗

LOTUSNatural Products (Wikidata)compounds↗

GoaTGenomes on a Tree · Sangergenome & karyotype↗

GLoBIGlobal Biotic Interactionsbiotic interactions↗

On this page6 sections

Every layer below draws on the sources above — open one to explore it, or use ← → to move between tabs.

NarrativeWikipediaarticle

Chemical compositionLOTUS2 compounds

Occurrence & distributionGBIF38 records

Environmental DNA8 datasets · 12 countries510 detections

DNA & barcodingBOLD203 specimens

Genome at a glanceGoaT12 Mbp

01Narrative

Candida glabrata is a species of haploid yeast of the genus Candida, previously known as Torulopsis glabrata. Despite the fact that no sexual life cycle has been documented for this species, C. glabrata strains of both mating types are commonly found. C. glabrata is generally a commensal of human mucosal tissues, but in today's era of wider human immunodeficiency from various causes (for example, therapeutic immunomodulation, longer survival with various comorbidities such as diabetes, and HIV infection), C. glabrata is often the second or third most common cause of candidiasis as an opportunistic pathogen. Infections caused by C. glabrata can affect the urogenital tract or even cause systemic infections by entrance of the fungal cells in the bloodstream (Candidemia), especially prevalent in immunocompromised patients.

No narrative description available for this taxon yet.

02Traits & measurements

No structured trait data for this taxon yet.

03Chemical composition2 compounds

Compounds documented for Nakaseomyces glabratus across natural-product and food-composition databases — not just the ~150 nutrients on a classic label ("nutritional dark matter").

Compound class profile2 classes

Cholestane steroids $ Lanostane, Tirucallane and Euphane triterpenoids1

Ergostane steroids1

Documented compounds2 total

Tissue Source Quantified only

Compound	Class	Amount	Source
4,4-dimethylzymosterol		present	LOTUS
fecosterol		present	LOTUS

05DNA & barcoding203 specimens

A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Nakaseomyces glabratus has left across the world's sequence archives.

At a glance

DNA specimens203

Marker genes3

eDNA detections510

Countries12

Marker genes sequenced

★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.

★COI-5P★ITS28S-D1-D2

animal barcodefungal barcodemarker

06Genome at a glanceGoaT

The complete instruction manual Nakaseomyces glabratus carries — its genome. We read it from three angles — how big it is, how the DNA is packed into chromosomes, and how completely it has been sequenced — and explain how to read each value as you go.

Genome sizehow big the whole instruction manual is

Genome size12 300 000 bp

Measured in base pairs (bp) — the individual letters of DNA (human ≈ 3.2 Gb, a bacterium a few million). The chart places this genome on a logarithmic scale — each step to the right is ten times bigger — among reference organisms. Across species a bigger genome loosely tracks with larger cells, slower growth and lower-energy lifestyles (powered flight favours small genomes) — yet it does not imply more genes or a more advanced organism (the long-standing C-value paradox).

BACTERIUM Carsonella ruddii0.00016 Gb

THIS GENOME Nakaseomyces glabratus0.01 Gb

FUNGUS0.04 Gb

INSECT0.25 Gb

HUMAN3.2 Gb

WHEAT17 Gb

FERN Tmesipteris160.45 Gb

Sequencing statusassembly quality — how far to trust these numbers

Assembly level tells you how finished the sequence is — from fragmented contigs, through scaffolds, up to a full chromosome-level assembly. BUSCO % estimates completeness: the share of genes expected to be present that were actually found. These describe the data quality, not the organism.

Assembly levelComplete Genome

Completeness99.3% BUSCO

08Occurrence & distribution

Record type38 records

Museum / vouchered38

Range

Area of Occupancy AOO60 km²

Museum / Voucheredphysical evidence

Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.

Coordinate accuracy100% within 1 km

≤100 m 1

1 georeferenced · 37 without coordinates

Open the institutions mapphysical evidence38

10Collections & institutions

Institution	Specimens
UAclocation not on record	1

1 institutions · 1 of 38 vouchered records shown · 33 without an institution code

09Environmental DNA510 detections

Where the DNA of Nakaseomyces glabratus was picked up in samples of water, soil or air — nobody saw the organism, only its DNA left behind. A trace is a clue that the species was near, not a confirmed sighting.

Signal

Detections DNA found510

Studies independent surveys8

Countries12

Verifiable raw sequence linked3

Signal confidence: moderateweighed across independent studies, places & mapped detections

Where its DNA was found

0 of 510 detections have coordinates

Open the map12 countries0

unknownfoodhumanwater; plantinsect

How strong is each trace?

DNA read depthRead counts were not reported for this species — the map shows presence only, not how strong each trace was.

Measured at samplingin-field

Temperature19.2 °C 7.00–32.1

pH6.08 4.10–9.30

Conductivity113 µS/cm 12.0–61,061

Salinity35.3 PSU 28.7–36.7

Dissolved oxygen7.77 mg/L 6.42–10.7

Turbidity0.332 NTU 0.01–7.28

Organic carbon0.695 % 0.003–5.22

Water content16.2 % 5.63–80.1

Nitrate-N4.29 mg/kg 0.644–57.0

Nitrate1.50 µmol/L 0.1–13.1

Phosphorus11.0 mg/kg 2.00–284

Clay14.9 % 0.93–40.4

Sand72.9 % 27.1–97.1

Depth0.2 m 0–750

Coastal waterPelagicSoilKandosolSodosolFerrosolRudosolDermosolLatLon out of range

201 samples with on-site data · median with range · describes the sample, not the organism

Modelled climatemodelled

−15°Ctemperature across detection sites+40°C

Temperature median19.5 °C 13.1–26.5

Seasonal swing summer↔winter7.80 °C

Max temp (day)21.8 °C 15.6–27.9

Min temp (night)16.4 °C 10.0–23.5

Precipitation73.7 mm/mo 19.5–135

Air humidity58.7 % 55.4–63.4

Moisture balance22.7 mm/mo

Vapour deficit920 Pa 643–1,297

Wind speed5.90 m/s

Cloud cover26.0 % 16.5–43.0

CHELSA 1981–2010, ~9 km grid, at location & month of 270 detection points · median with p10–p90 · reflects where sampling happened, not only the true niche

How to read this: each dot is one detection of this species' DNA in an environmental sample. The confidence meter weighs how many independent studies and places back up the signal — one detection in one study is a hint; many across several studies is solid. Records dated before 2008 (when eDNA methods began) are treated as likely mislabeled and left off the map.

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