Mus musculus
Linnaeus, 1758 · speciesAt a glance
Sources11 archives
Databases and archives Mus musculus's data was compiled from.
WikipediaWikimedia Foundation2 languages↗
GBIFGlobal Biodiversity Information Facility171 102 records↗
ENAEuropean Nucleotide Archive · EMBL-EBI1 127 eDNA detections↗
BOLD SystemsCentre for Biodiversity Genomics955 specimens↗
NPASSNat. Product Activity & Species Sourcecompounds↗
Open Tree of LifeOpenTreephylogeny backbone↗
GoaTGenomes on a Tree · Sangergenome & karyotype↗
NCBIUS National Library of Medicinegenome & karyotype↗
Tree of SexTree of Sex Consortiumgenome & karyotype↗
Paleobiology DatabasePBDB consortiumfossil record↗
GLoBIGlobal Biotic Interactionsbiotic interactions↗Every layer below draws on the sources above — open one to explore it, or use ← → to move between tabs.
The house mouse (Mus musculus) is a small mammal of the order Rodentia, characteristically having a pointed snout, large rounded ears, and a long and almost hairless tail. It is one of the most abundant species of the genus Mus. Although a wild animal, the house mouse has benefited significantly from associating with human habitation to the point that truly wild populations are significantly less common than the semi-tame populations near human activity. The house mouse has been domesticated as the pet or fancy mouse, and as the laboratory mouse, which is one of the most important model organisms in biology and medicine. The complete mouse reference genome was sequenced in 2002.
No narrative description available for this taxon yet.
Size & morphology3
Life cycle & reproduction9
Diet & foraging5
Habitat & environment2
Physiology & chemistry2
Other traits5
Compounds documented for Mus musculus across natural-product and food-composition databases — not just the ~150 nutrients on a classic label ("nutritional dark matter").
Compound class profile5 classes
Documented compounds1 386 total
| Compound | Class | Amount | Source |
|---|---|---|---|
| ((2R)-3-(2-aminoethoxy(hydroxy)phosphoryl)oxy-2-hydroxypropyl) acetate | present | NPASS | |
| (+)-Valine | present | NPASS | |
| (+-)-2-Hydroxyglutaric acid | present | NPASS | |
| (-)-Cystine | present | NPASS | |
| (-)-Ecgonine methyl ester | present | NPASS | |
| (12S)-hydroperoxy-(14R,15S)-epoxy-(5Z,8Z,10E)-icosatrienoic acid | present | NPASS | |
| (12S)-hydroperoxy-(14S,15R)-epoxy-(5Z,8Z,10E)-icosatrienoic acid | present | NPASS | |
| (1R,2R,3S,5S)-3-hydroxy-8-methyl-8-azoniabicyclo[3.2.1]octane-2-carboxylate | present | NPASS | |
| (2-Aminoethyl)phosphonic acid | present | NPASS | |
| (2-Oxochromen-7-Yl) Hydrogen Sulfate | present | NPASS |
A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Mus musculus has left across the world's sequence archives.
At a glance
★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.
Besides the big genome in the nucleus, cells carry a small, circular loop of DNA inside the cell's energy factories — the mitochondria. It is inherited almost only from the mother and is a leftover from ancient bacteria that moved into the cell. The mitochondrial markers above (ND*, COX, CYTB…) are read from exactly this loop. Outer ring = one strand, inner ring = the other.
The complete instruction manual Mus musculus carries — its genome. We read it from three angles — how big it is, how the DNA is packed into chromosomes, and how completely it has been sequenced — and explain how to read each value as you go.
Genome sizehow big the whole instruction manual is
Measured in base pairs (bp) — the individual letters of DNA (human ≈ 3.2 Gb, a bacterium a few million). The chart places this genome on a logarithmic scale — each step to the right is ten times bigger — among reference organisms. Across species a bigger genome loosely tracks with larger cells, slower growth and lower-energy lifestyles (powered flight favours small genomes) — yet it does not imply more genes or a more advanced organism (the long-standing C-value paradox).
Chromosomes & ploidyhow the DNA is packaged
2n is the full chromosome count in a normal body cell; n is a gamete (egg or sperm), which carries half. Ploidy is how many complete chromosome sets each cell holds — 2× (diploid) is typical for animals, while higher levels (polyploidy) are common in plants. Click any value below to see the underlying records and sources.
2n 406×GoaT · Animal Chromosome Counts Database · GoaT · Tree of Sex Database · GoaT · Animal Genome Size Database +1
2n 262×GoaT · Animal Chromosome Counts Database
2n 221×GoaT · Animal Chromosome Counts Database
2n 231×GoaT · Animal Chromosome Counts Database
2n 241×GoaT · Animal Chromosome Counts Database
2n 251×GoaT · Animal Chromosome Counts Database
2n 271×GoaT · Animal Chromosome Counts Database
2n 281×GoaT · Animal Chromosome Counts Database
2n 291×GoaT · Animal Chromosome Counts Database
2n 301×GoaT · Animal Chromosome Counts Database
2n 311×GoaT · Animal Chromosome Counts Database
2n 321×GoaT · Animal Chromosome Counts Database
2n 331×GoaT · Animal Chromosome Counts Database
2n 341×GoaT · Animal Chromosome Counts Database
2n 351×GoaT · Animal Chromosome Counts Database
2n 361×GoaT · Animal Chromosome Counts Database
2n 371×GoaT · Animal Chromosome Counts Database
2n 381×GoaT · Animal Chromosome Counts Database
2n 391×GoaT · Animal Chromosome Counts Database
Sequencing statusassembly quality — how far to trust these numbers
Assembly level tells you how finished the sequence is — from fragmented contigs, through scaffolds, up to a full chromosome-level assembly. BUSCO % estimates completeness: the share of genes expected to be present that were actually found. These describe the data quality, not the organism.
How far back this lineage goes — and how we know. Everything here is measured in Ma, short for “mega-annum”: millions of years ago. The chart reads left to right like a calendar of the Earth, from the deep past on the left to today at the right edgetop to bottom like a core drilled through the Earth, from the deep past at the top down to today at the bottom.
At a glance
When this lineage existed
How to read this: the coloured strip along the bottomdown the left is the geological calendar — the standard epochs (Pliocene, Pleistocene…) every museum uses, shown so you can see which chapter of Earth's history this lineage lived in. This lineage is a young one, so the strip is zoomed in to epochs — the finer subdivisions inside a period. The solid bar is the fossil range: the span between the oldest and the youngest fossil that palaeontologists have assigned to Mus musculus. Above itBeside it, the bars count how many dated finds fall in each slice of time; the tallest bar is labelled, and heights use a square-root scale so that thin slices stay visible next to rich ones. Read this as how well each stretch of time is preserved and studied — thick bars mean plenty of the right kind of rock and plenty of collectors, which is related to, but not the same as, how common it actually was. The orange marker is the DNA clock: DNA accumulates mutations at a roughly steady rate, so comparing this species' DNA with its relatives estimates when the lineage split off — independently of any fossil.
The two clocks disagree here. The fossil record reaches back to 2.58 Ma, but the molecular clock dates the lineage to only 1.8 Ma — about 0.78 Myr younger. A fossil cannot be older than the lineage it belongs to, so one of the two is off: either the fossil is assigned to the wrong species, or the clock is running fast.
How it livedPBDB
Record type171 133 records
Origin
Range
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Museum / Voucheredphysical evidence
Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Holding institutions75 of 178 geolocated
Institutions and collections holding physical, vouchered specimens of this species — click a row to fly to it on the map.
| Institution | Specimens |
|---|---|
| Sam Noble Oklahoma Museum of Natural Historylocation not on record | 3 625 |
| MRI-PASlocation not on record | 2 360 |
| Berkeley, US | 2 250 |
| Western Australian Museumlocation not on record | 2 217 |
| Australian National Wildlife Collectionlocation not on record | 1 882 |
| Zoological Museum, National Museum of Natural History, Ukrainian Academy of Scienceslocation not on record | 1 709 |
| Muzeum Górnośląskie w Bytomiulocation not on record | 1 542 |
| Royal Saskatchewan Museumlocation not on record | 1 202 |
| Louisiana State University, Museum of Zoologylocation not on record | 1 174 |
| München, DE | 1 158 |
| Chicago, US | 1 118 |
| Adam Mickiewicz University in Poznańlocation not on record | 1 026 |
| UNIBUClocation not on record | 961 |
| Wuzhou, CN | 850 |
| Tempe, US | 828 |
| Royal Museum for Central Africalocation not on record | 777 |
| Natick, US | 753 |
| Museums Victorialocation not on record | 683 |
| Cambridge, US | 671 |
| Sydney, AU | 669 |
| Kuopio, FI | 576 |
| Fort Hays State University, Sternberg Museumlocation not on record | 488 |
| Auckland, NZ | 463 |
| ASNHClocation not on record | 426 |
| Helsinki, FI | 384 |
| CASlocation not on record | 380 |
| Natural History Museum of Utahlocation not on record | 370 |
| Seattle, US | 357 |
| Los Angeles, US | 352 |
| North Carolina Museum of Natural Scienceslocation not on record | 308 |
| Buenos Aires, AR | 303 |
| Florida Museum of Natural History- Zoology, Paleontology & Paleobotanylocation not on record | 284 |
| Ann Arbor, US | 272 |
| Brussels, BE | 267 |
| Toronto, CA | 256 |
| Zacatecas, MX | 249 |
| QVMAGlocation not on record | 246 |
| Instytut Ochrony Przyrody Polskiej Akademii Nauklocation not on record | 245 |
| Oulu, FI | 239 |
| Denver, US | 228 |
| ISUIZlocation not on record | 224 |
| SECEMlocation not on record | 223 |
| RBINS-Scientific Heritagelocation not on record | 188 |
| South Kensington, GB | 172 |
| Museum and Art Gallery of the Northern Territorylocation not on record | 169 |
| Washington State University, Charles R. Conner Museumlocation not on record | 163 |
| ASUlocation not on record | 161 |
| Universidad Católica de Manizaleslocation not on record | 152 |
| Salzburg, AT | 147 |
| Museo civico La Terra e l'Uomo di Crocetta del Montellolocation not on record | 146 |
| Mongolian Museum of Natural Historylocation not on record | 144 |
| 133 | |
| Centro Regional de Investigación en Salud Pública, Instituto Nacional de Salud Públicalocation not on record | 132 |
| Honolulu, US | 131 |
| Provo, US | 128 |
| EL PASO, US | 122 |
| MZLUlocation not on record | 117 |
| Geneva, CH | 117 |
| Paris, FR | 116 |
| KhUMNlocation not on record | 114 |
| Copenhagen, DK | 104 |
| Mexico City, MX | 94 |
| University of Wyoming Museum of Vertebrateslocation not on record | 93 |
| Belgrade : Natural History Museumlocation not on record | 92 |
| Ohio State University - Mammal Division, Columbus, OH (OSUM)location not on record | 87 |
| NTNU-VMlocation not on record | 85 |
| Barcelona, ES | 84 |
| Kristiansand, NO | 81 |
| Ithaca, US | 77 |
| Washington, US | 76 |
| Texas Cooperative Wildlife Collectionlocation not on record | 73 |
| Ciudad de México, MX | 73 |
| Tasmanian Museum & Art Gallerylocation not on record | 64 |
| Bergen, NO | 62 |
| SMNHTAUlocation not on record | 60 |
| Bonn, DE | 59 |
| Tacoma, US | 57 |
| Albany, US | 54 |
| University of Nevada, Museum of Biologylocation not on record | 51 |
| Universidad de Caldas (UCaldas)location not on record | 51 |
| Philip L. Wright Zoological Museumlocation not on record | 51 |
| San Diego, US | 51 |
| Saint John, CA | 50 |
| Stockholm, SE | 50 |
| UTCMlocation not on record | 48 |
| Tromsø, NO | 42 |
| NHMOlocation not on record | 42 |
| Philadelphia, US | 41 |
| Central Michigan University Museum of Cultural and Natural Historylocation not on record | 40 |
| Lubbock, US | 40 |
| Natural History Museum Rotterdamlocation not on record | 37 |
| Provincia di Livornolocation not on record | 35 |
| New Haven, US | 35 |
| Edmonton, CA | 32 |
| National Natural History Collectionslocation not on record | 31 |
| Sevilla, ES | 28 |
| IADIZAlocation not on record | 26 |
| Museo de Zoología de la Universidad de Concepción (MZUC-UCCC)location not on record | 25 |
| Zoological Museum, Moscow Lomonosov State Universitylocation not on record | 24 |
| San Nicolás de los Garza, MX | 24 |
| Chicago, US | 23 |
| Universidad del Valle de Guatemalalocation not on record | 23 |
| NSW Dept of Planning, Industry and Environmentlocation not on record | 23 |
| Emporia, US | 22 |
| Uniwersytet w Białymstokulocation not on record | 20 |
| Tall Timbers Research Stationlocation not on record | 20 |
| Liverpool, GB | 19 |
| California State University, Long Beachlocation not on record | 19 |
| Tapachula, MX | 18 |
| Indiana State Universitylocation not on record | 17 |
| NMUlocation not on record | 16 |
| Universidad Nacional de Colombia (UNAL)location not on record | 15 |
| Londrina, BR | 15 |
| Iowa City, US | 15 |
| New Mexico Museum of Natural History and Sciencelocation not on record | 14 |
| East Lansing, US | 12 |
| Ciudad de México, MX | 11 |
| IMEDEAlocation not on record | 11 |
| National Institute of Biological Resourceslocation not on record | 11 |
| Centro de Investigación en Biodiversidad y Conservación, Universidad Autónoma del Estado de Moreloslocation not on record | 10 |
| Natural History Museum, Aarhus Denmarklocation not on record | 10 |
| Puerto Ayora, EC | 9 |
| San Francisco, US | 9 |
| CBDClocation not on record | 8 |
| UFESlocation not on record | 8 |
| Santa Cruz, US | 7 |
| INMAlocation not on record | 7 |
| Instituto de Investigación de Recursos Biológicos Alexander von Humboldt (IAvH)location not on record | 6 |
| Institute of Plant and Animal Ecology (IPAE)location not on record | 6 |
| Moore Laboratory of Zoology, Occidental Collegelocation not on record | 6 |
| Abilene Christian University Natural History Collectionlocation not on record | 6 |
| Universidad del Tolima (UT)location not on record | 6 |
| Theriological Collection of Yuriy Fedkovych Chernivtsi National Universitylocation not on record | 5 |
| Universidad Industrial de Santander (UIS)location not on record | 5 |
| Sistema de Colecciones Biológicas, Escuela de Biología, Universidad de San Carlos de Guatemala location not on record | 5 |
| Kawasaki Shi Tama Ku, JP | 4 |
| Corporación Universitaria Santa Rosa de Cabal (UNISARC)location not on record | 4 |
| U. S. Food and Drug Administration, Center for Veterinary Medicinelocation not on record | 4 |
| Mérida, MX | 4 |
| Ohio Wesleyan University Museum of Natural Historylocation not on record | 4 |
| Cincinnati, US | 4 |
| UFSMlocation not on record | 3 |
| NSMKlocation not on record | 3 |
| University of Liverpoollocation not on record | 3 |
| Museo de Zoología, Universidad Técnica Particular de Lojalocation not on record | 3 |
| University of Victorialocation not on record | 3 |
| Guasave, MX | 3 |
| Western New Mexico University Museumlocation not on record | 3 |
| La Paz, MX | 2 |
| Bourges, FR | 2 |
| Champaign, US | 2 |
| Universidad EAFIT (EAFIT)location not on record | 2 |
| BD-CSIClocation not on record | 2 |
| Pontificia Universidad Javeriana (PUJ)location not on record | 2 |
| Bavarian State Collection of Zoologylocation not on record | 2 |
| Mexico City, MX | 2 |
| University of Wisconsin, Zoological Museumlocation not on record | 2 |
| Rovaniemi, FI | 2 |
| Universidad de la Amazonia (UniAmazonia)location not on record | 1 |
| CBGP (UMR INRAE, Cirad, IRD, Institut Agro | Montpellier)location not on record | 1 |
| University of North Carolina at Greensborolocation not on record | 1 |
| CEFElocation not on record | 1 |
| Midwestern State Universitylocation not on record | 1 |
| The University of the West Indies, Trinidad and Tobagolocation not on record | 1 |
| St. Paul, US | 1 |
| Instituto Tecnológico Metropolitano (ITM)location not on record | 1 |
| Tomioka, JP | 1 |
| Washington State Universitylocation not on record | 1 |
| Tallinn, EE | 1 |
| University of the South Pacificlocation not on record | 1 |
| AvesChilelocation not on record | 1 |
| APN-ARlocation not on record | 1 |
| University of Malaya, Museum of Zoologylocation not on record | 1 |
| Forssa, FI | 1 |
| OSUClocation not on record | 1 |
| Schenectady, US | 1 |
| Ensenada, MX | 1 |
| UCOCVlocation not on record | 1 |
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
Where the DNA of Mus musculus was picked up in samples of water, soil or air — nobody saw the organism, only its DNA left behind. A trace is a clue that the species was near, not a confirmed sighting.
Signal
Where its DNA was found
How strong is each trace?
Modelled climatemodelled
How to read this: each dot is one detection of this species' DNA in an environmental sample. The confidence meter weighs how many independent studies and places back up the signal — one detection in one study is a hint; many across several studies is solid. Records dated before 2008 (when eDNA methods began) are treated as likely mislabeled and left off the map.