Compounds documented for Lithophyllum incrustans across natural-product and food-composition databases — not just the ~150 nutrients on a classic label ("nutritional dark matter").
A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Lithophyllum incrustans has left across the world's sequence archives.
At a glance
DNA specimens26
BINs5
Marker genes3
GenBank sequences10
eDNA detections5
The DNA barcodea real sequence read deposited for this species
Each circle is a barcode variant; bigger = more specimens, colour = region. Lines join the most similar variants and the tick marks count the mutations between them — a tight cluster is one “dialect”, a long line a more divergent lineage. Click a circle to list its actual specimens.
Europe
Closest relatives by DNA barcode
The species whose COI barcode is most similar to this one — a quick “who is this most like”. The percentage is how much the barcode differs; it approximates, but is not, the full evolutionary tree.
★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.
★COI-5P★rbcL10PSBA
animal barcodeplant barcodemarker
07Deep time23–0 Ma
How far back this lineage goes — and how we know. Everything here is measured in Ma, short for “mega-annum”: millions of years ago. The chart reads left to right like a calendar of the Earth, from the deep past on the left to today at the right edgetop to bottom like a core drilled through the Earth, from the deep past at the top down to today at the bottom.
At a glance
Fossil range23–0 Ma Oligocene → Holocene
Dated fossil finds31
DNA clock origin33.9 Ma TimeTree
Ghost lineage10.9 Myr older than any fossil
StatusExtinct no longer alive anywhere
When this lineage existed
How to read this: the coloured strip along the bottomdown the left is the geological calendar — the standard epochs (Pliocene, Pleistocene…) every museum uses, shown so you can see which chapter of Earth's history this lineage lived in. This lineage is a young one, so the strip is zoomed in to epochs — the finer subdivisions inside a period. The solid bar is the fossil range: the span between the oldest and the youngest fossil that palaeontologists have assigned to Lithophyllum incrustans. Above itBeside it, each dot is one dated fossil find — few enough to count, so they are drawn individually rather than as a graph. The orange marker is the DNA clock: DNA accumulates mutations at a roughly steady rate, so comparing this species' DNA with its relatives estimates when the lineage split off — independently of any fossil. Where the DNA reaches further back than the oldest fossil, the gap is hatched: the ghost lineage. It means the lineage was already out there, but has left us nothing we have dug up yet.
fossil range (PBDB) †each dot = one dated findDNA clock originghost lineage
Extinct — but the bar still reaches today. PBDB flags this lineage as extinct, yet its fossil range ends at 0 Ma — the present day. Both cannot be literally true. This is what it looks like when the youngest fossils fall inside the most recent slice of the time scale: the endpoint rounds to “today” rather than to the actual disappearance, which may be far too recent for an axis measured in millions of years to resolve. Read the young end of the bar (and the †) as the limit of the dated record, not as the date it died out.
08Occurrence & distribution
Record type9 665 records
Wild obs. + sensor4 356
Museum / vouchered1 738
Fossil31
Other3 540
Origin
Native351
Range
Area of Occupancy AOO5 064 km²
Depth
0–200 m sunlit776
200–1000 m twilight0
1–4 km midnight0
>4 km abyssal0
median 0 m · max 73 m · 776 records with depth
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Coordinate accuracy95% within 1 km
≤100 m 1 209≤1 km 978≤10 km 89>10 km 22
2 298 georeferenced · 2 058 without coordinates
Open the mapobservation + sensor4 356
Museum / Voucheredphysical evidence
Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.
Coordinate accuracy28% within 1 km
≤100 m 44≤1 km 5≤10 km 19>10 km 104
172 georeferenced · 1 566 without coordinates
Open the institutions mapphysical evidence1 738
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
10Collections & institutions
Holding institutions5 of 19 geolocated
Institutions and collections holding physical, vouchered specimens of this species — click a row to fly to it on the map.
Institution
Specimens
Institut Francais pour l'Etude de la Merlocation not on record
618
486location not on record
354
South Kensington, GB
188
University of Stellenboschlocation not on record
103
DASSHlocation not on record
30
PNHSlocation not on record
28
UCA - SOCIBlocation not on record
11
BDBClocation not on record
6
ISAlocation not on record
4
Universidad de Málagalocation not on record
4
IPMA - Divisão de Geologia e Georecursos Marinhoslocation not on record
3
Chapel Hill, US
3
Clocation not on record
2
UAclocation not on record
2
Banyoles, ES
2
LDlocation not on record
1
Bronx, US
1
Durham, US
1
Universidade de Santiago de Compostelalocation not on record
1
19 institutions · 1 362 of 1 738 vouchered records shown · 22 without an institution code
09Environmental DNA5 detections
Where the DNA of Lithophyllum incrustans was picked up in samples of water, soil or air — nobody saw the organism, only its DNA left behind. A trace is a clue that the species was near, not a confirmed sighting.
Signal
Detections DNA found5
Studies independent surveys1
Countries1
Signal confidence: weakweighed across independent studies, places & mapped detections
Where its DNA was found
0 of 5 detections have coordinates
Open the map1 country0
How strong is each trace?
DNA read depthRead counts were not reported for this species — the map shows presence only, not how strong each trace was.
Modelled climatemodelled
−15°Ctemperature across detection sites+40°C
Temperature median26.7 °C 26.7–26.7
Seasonal swing summer↔winter21.1 °C
Max temp (day)32.6 °C
Min temp (night)18.7 °C
Precipitation10.3 mm/mo
Air humidity43.0 %
Moisture balance-173 mm/mo
Vapour deficit1,995 Pa
Wind speed2.10 m/s
Cloud cover28.2 %
CHELSA 1981–2010, ~9 km grid, at location & month of 3 detection points · median with p10–p90 · reflects where sampling happened, not only the true niche
How to read this: each dot is one detection of this species' DNA in an environmental sample. The confidence meter weighs how many independent studies and places back up the signal — one detection in one study is a hint; many across several studies is solid. Records dated before 2008 (when eDNA methods began) are treated as likely mislabeled and left off the map.