Lithocarpus glaber, the Japanese oak, is a tree species in the genus Lithocarpus found in Japan, China and Taiwan. Mitami Shrine, a Shinto shrine in Sakai, Osaka Prefecture, Japan, is famous locally for its comparatively large population of Lithocarpus glaber, known as Shiribukagashi (尻深樫 シリブカガシ). In China, it is called ke (柯). In Cantonese, it is called Seklik (石櫟). Condensed tannins from L. glaber leaves have been analysed through acid-catalyzed degradation in the presence of cysteamine and have a potent free radical scavenging activity.HPLC, NMR and MALDI-TOF MS analysis of condensed tannins from Lithocarpus glaber leaves with potent free radical scavenging activity. Liang Liang Zhang and Yi Ming Lin, 2008
No narrative description available for this taxon yet.
Compounds documented for Lithocarpus glaber across natural-product and food-composition databases — not just the ~150 nutrients on a classic label ("nutritional dark matter").
Compound class profile2 classes
Stigmastane steroids1
Flavan-3-ols1
Documented compounds2 total
Compound
Class
Amount
Source
beta-Sitosterol
present
LOTUS
Catechin 3-O-alpha-L-rhamnoside
present
LOTUS
05DNA & barcoding34 specimens
A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Lithocarpus glaber has left across the world's sequence archives.
At a glance
DNA specimens34
Marker genes5
GenBank sequences10
eDNA detections17
Countries2
The DNA barcodea real sequence read deposited for this species
Lithocarpus glaber TF<JPN>:TW025626 chloroplast rbcL gene for ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial cds
Marker genes sequenced
★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.
★matK4★rbcL6★ITS★ITS2trnH-psbA
plant barcodefungal barcodemarker
07Deep time~3.69 Ma lineage
How far back this lineage goes — and how we know. Everything here is measured in Ma, short for “mega-annum”: millions of years ago. The chart reads left to right like a calendar of the Earth, from the deep past on the left to today at the right edgetop to bottom like a core drilled through the Earth, from the deep past at the top down to today at the bottom.
At a glance
DNA clock origin3.69 Ma TimeTree
When this lineage existed
How to read this: the coloured strip along the bottomdown the left is the geological calendar — the standard epochs (Pliocene, Pleistocene…) every museum uses, shown so you can see which chapter of Earth's history this lineage lived in. This lineage is a young one, so the strip is zoomed in to epochs — the finer subdivisions inside a period. The orange marker is the DNA clock: DNA accumulates mutations at a roughly steady rate, so comparing this species' DNA with its relatives estimates when the lineage split off — independently of any fossil.
DNA clock origin
08Occurrence & distribution
Record type1 822 records
Wild obs. + sensor351
Museum / vouchered1 471
Origin
Native18
Range
Area of Occupancy AOO2 468 km²
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Coordinate accuracy51% within 1 km
≤100 m 118≤1 km 15≤10 km 48>10 km 81
262 georeferenced · 89 without coordinates
Open the mapobservation + sensor351
Museum / Voucheredphysical evidence
Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.
Coordinate accuracy58% within 1 km
≤100 m 3≤1 km 22≤10 km 12>10 km 6
43 georeferenced · 1 428 without coordinates
Open the institutions mapphysical evidence1 471
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
10Collections & institutions
Holding institutions41 of 68 geolocated
Institutions and collections holding physical, vouchered specimens of this species — click a row to fly to it on the map.
Institution
Specimens
Beijing, CN
255
Nanjing, CN
152
Guangzhou, CN
151
Guilin, CN
76
Institute for Agricultural Bacteriology and Fermentation Biologylocation not on record
69
Shanghai, CN
69
Kunming, CN
60
Guangzhou, CN
48
Chengdu, CN
44
Hangzhou, CN
41
Siouxland Heritage Museumlocation not on record
39
Kochi, JP
39
Tokushima, JP
31
Paris, FR
30
Tsukuba, JP
22
Nagasaki University - Fisherieslocation not on record
19
TAIElocation not on record
18
Xiamen, CN
17
Central China Normal Universitylocation not on record
16
Nagano City, JP
16
Changsha, CN
16
Zhejiang Universitylocation not on record
15
Jiangxi Agricultural Universitylocation not on record
12
Kagoshima, JP
12
Taipei, TW
12
Odawara, JP
11
Zhejiang Museum of Natural Historylocation not on record
11
Beijing, CN
11
Sendai, JP
10
Bronx, US
9
SCAUlocation not on record
9
Nanjing, CN
8
Zhengzhou, CN
7
Nishihara, JP
7
Awka, NG
7
Seoul, KR
7
Guiyang, CN
7
Forestry and Forest Products Research Institutelocation not on record
6
Herbarium of South China Botanical Gardenlocation not on record
6
Xinxiang, CN
6
Shanghai, CN
6
Zhuzhou, CN
4
Fujian Institute of Subtropical Botanylocation not on record
4
Yangling, CN
4
Edinburgh, GB
3
Hangzhou Normal Collegelocation not on record
3
J. Rusek Collectionlocation not on record
2
Peking Universitylocation not on record
2
Xishuangbanna Tropical Botanical Garden, Academia Sinicalocation not on record
2
South China Normal Universitylocation not on record
2
Guizhou Forestry Schoollocation not on record
2
Tianjin Natural History Museumlocation not on record
2
LDlocation not on record
2
Anhui Normal Universitylocation not on record
2
Beijing Normal Universitylocation not on record
1
Guiyang, CN
1
Otaru, JP
1
Wuhan, CN
1
Capital Normal Universitylocation not on record
1
Christchurch, NZ
1
Chengdu, CN
1
Knoxville, US
1
Jiujiang Forestry Institutelocation not on record
1
KIRMlocation not on record
1
Taipei, TW
1
GZUlocation not on record
1
South Kensington, GB
1
Central China Agricultural Universitylocation not on record
1
68 institutions · 1 455 of 1 471 vouchered records shown · 15 without an institution code
09Environmental DNA17 detections
Where the DNA of Lithocarpus glaber was picked up in samples of water, soil or air — nobody saw the organism, only its DNA left behind. A trace is a clue that the species was near, not a confirmed sighting.
Signal
Detections DNA found17
Studies independent surveys1
Countries2
Signal confidence: weakweighed across independent studies, places & mapped detections
Where its DNA was found
0 of 17 detections have coordinates
Open the map2 countries0
How strong is each trace?
DNA read depthRead counts were not reported for this species — the map shows presence only, not how strong each trace was.
Modelled climatemodelled
−15°Ctemperature across detection sites+40°C
Temperature median22.4 °C 10.0–28.4
Seasonal swing summer↔winter23.2 °C
Max temp (day)24.5 °C 12.0–31.3
Min temp (night)17.7 °C 5.70–25.2
Precipitation264 mm/mo 195–557
Air humidity64.0 % 61.7–67.3
Moisture balance91.8 mm/mo 53.0–439
Vapour deficit950 Pa 491–1,434
Wind speed2.90 m/s 2.00–3.60
Cloud cover42.3 % 35.8–49.3
CHELSA 1981–2010, ~9 km grid, at location & month of 13 detection points · median with p10–p90 · reflects where sampling happened, not only the true niche
How to read this: each dot is one detection of this species' DNA in an environmental sample. The confidence meter weighs how many independent studies and places back up the signal — one detection in one study is a hint; many across several studies is solid. Records dated before 2008 (when eDNA methods began) are treated as likely mislabeled and left off the map.