Compounds documented for Ilex macropoda across natural-product and food-composition databases — not just the ~150 nutrients on a classic label ("nutritional dark matter").
A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Ilex macropoda has left across the world's sequence archives.
At a glance
DNA specimens38
Marker genes4
GenBank sequences10
eDNA detections24
Countries1
The DNA barcodea real sequence read deposited for this species
Ilex macropoda TF<JPN>:Sakio092 chloroplast rbcL gene for ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial cds
Marker genes sequenced
★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.
★matK3★rbcL7★ITStrnH-psbA
plant barcodefungal barcodemarker
07Deep time~5.64 Ma lineage
How far back this lineage goes — and how we know. Everything here is measured in Ma, short for “mega-annum”: millions of years ago. The chart reads left to right like a calendar of the Earth, from the deep past on the left to today at the right edgetop to bottom like a core drilled through the Earth, from the deep past at the top down to today at the bottom.
At a glance
DNA clock origin5.64 Ma TimeTree
When this lineage existed
How to read this: the coloured strip along the bottomdown the left is the geological calendar — the standard epochs (Pliocene, Pleistocene…) every museum uses, shown so you can see which chapter of Earth's history this lineage lived in. This lineage is a young one, so the strip is zoomed in to epochs — the finer subdivisions inside a period. The orange marker is the DNA clock: DNA accumulates mutations at a roughly steady rate, so comparing this species' DNA with its relatives estimates when the lineage split off — independently of any fossil.
DNA clock origin
08Occurrence & distribution
Record type2 649 records
Wild obs. + sensor1 191
Museum / vouchered1 443
Cultivated / captive4
Other11
Range
Area of Occupancy AOO5 820 km²
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Coordinate accuracy3% within 1 km
≤100 m 18≤10 km 323>10 km 326
667 georeferenced · 524 without coordinates
Open the mapobservation + sensor1 191
Museum / Voucheredphysical evidence
Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.
Coordinate accuracy22% within 1 km
≤1 km 54≤10 km 186>10 km 1
241 georeferenced · 1 202 without coordinates
Open the institutions mapphysical evidence1 443
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
Coordinate accuracy100% within 1 km
≤1 km 1
1 georeferenced · 3 without coordinates
Open the mapnot free-living4
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
10Collections & institutions
Holding institutions45 of 76 geolocated
Institutions and collections holding physical, vouchered specimens of this species — click a row to fly to it on the map.
Institution
Specimens
Nagano City, JP
132
Shinshu Universitylocation not on record
122
Odawara, JP
116
Nagatoro-machi, Chichibu-gun, JP
75
Tomioka, JP
68
Toyama, JP
63
Bando, JP
63
Kochi, JP
63
Beijing, CN
61
KR
47
Sanda, JP
44
KURAlocation not on record
37
JP
35
Hangzhou, CN
34
Tsukuba, JP
33
Iwate Prefectural Museumlocation not on record
29
Fukushima Universitylocation not on record
23
Osaka, JP
21
Forestry and Forest Products Research Institutelocation not on record
20
Nanjing, CN
20
Anhui Normal Universitylocation not on record
17
FFPRIlocation not on record
17
National Institute of Biological Resourceslocation not on record
15
KOMlocation not on record
14
Herbarium of the Department of Botany, University of Tokyolocation not on record
13
Wuhan, CN
13
Akita Prefectural Museumlocation not on record
13
Kyoto Universitylocation not on record
13
Tokushima, JP
12
Sendai, JP
11
Nishihara, JP
11
Changsha, CN
10
Chiba, JP
10
Sagamihara, JP
9
Korea National Arboretumlocation not on record
7
Sugadaira Research Station, Mountain Science Center, University of Tsukubalocation not on record
7
Guangzhou, CN
7
Cambridge, US
6
Philadelphia, US
6
Zhejiang Universitylocation not on record
6
Omachi Alpine Museumlocation not on record
5
Ishikawa Museum of Natural Historylocation not on record
5
Parthenon Tama History Museumlocation not on record
5
Kagoshima, JP
4
Zhuzhou, CN
4
Elocation not on record
4
Seoul, KR
4
Central China Normal Universitylocation not on record
4
Shanghai, CN
4
Taipei, TW
4
Nishihara, JP
3
Otaru, JP
3
Xiangtan City, CN
3
Vancouver, CA
3
J.F.Oberlin Universitylocation not on record
3
DNSMlocation not on record
2
SCAUlocation not on record
2
Nanjing, CN
2
Toyota city nature sanctuarylocation not on record
2
SIHUlocation not on record
2
Kawasaki Shi Tama Ku, JP
2
Kunming, CN
2
Angwin, US
2
Yangling, CN
2
Institute for Agricultural Bacteriology and Fermentation Biologylocation not on record
2
Shanxi Universitylocation not on record
1
Shanghai, CN
1
Wuhan, CN
1
Museum Of Natural And Environmental History, Shizuokalocation not on record
1
San Jose State University, Museum of Birds and Mammalslocation not on record
1
Guilin, CN
1
黔东南州民族医药研究所标本室location not on record
1
Edinburgh, GB
1
Fort Worth, US
1
Guangzhou, CN
1
Gifu prefectural Museumlocation not on record
1
76 institutions · 1 412 of 1 443 vouchered records shown · 30 without an institution code
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
09Environmental DNA24 detections
Where the DNA of Ilex macropoda was picked up in samples of water, soil or air — nobody saw the organism, only its DNA left behind. A trace is a clue that the species was near, not a confirmed sighting.
Signal
Detections DNA found24
Studies independent surveys1
Countries1
Signal confidence: weakweighed across independent studies, places & mapped detections
Where its DNA was found
0 of 24 detections have coordinates
Open the map1 country0
How strong is each trace?
DNA read depthRead counts were not reported for this species — the map shows presence only, not how strong each trace was.
Modelled climatemodelled
−15°Ctemperature across detection sites+40°C
Temperature median19.9 °C 16.2–24.2
Seasonal swing summer↔winter23.2 °C
Max temp (day)23.4 °C 19.8–27.4
Min temp (night)16.2 °C 11.0–20.5
Precipitation231 mm/mo 172–314
Air humidity64.2 % 61.0–66.8
Moisture balance103 mm/mo 35.9–210
Vapour deficit860 Pa 626–1,059
Wind speed2.30 m/s 1.60–3.20
Cloud cover42.4 % 36.3–48.6
CHELSA 1981–2010, ~9 km grid, at location & month of 21 detection points · median with p10–p90 · reflects where sampling happened, not only the true niche
How to read this: each dot is one detection of this species' DNA in an environmental sample. The confidence meter weighs how many independent studies and places back up the signal — one detection in one study is a hint; many across several studies is solid. Records dated before 2008 (when eDNA methods began) are treated as likely mislabeled and left off the map.