Compounds documented for Ilex integra across natural-product and food-composition databases — not just the ~150 nutrients on a classic label ("nutritional dark matter").
Compound class profile5 classes
Ursane and Taraxastane triterpenoids8
Flavonols5
Unsaturated fatty acids4
Oleanane triterpenoids $ Ursane and Taraxastane triterpenoids3
A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Ilex integra has left across the world's sequence archives.
At a glance
DNA specimens11
Marker genes4
GenBank sequences10
eDNA detections22
Countries2
The DNA barcodea real sequence read deposited for this species
Ilex integra var. integra TF<JPN>:TW019366 chloroplast rbcL gene for ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial cds
Marker genes sequenced
★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.
★matK1★rbcL9★ITS★ITS2
plant barcodefungal barcode
06Genome at a glanceGoaT
The complete instruction manualIlex integra carries — its genome. We read it from three angles — how big it is, how the DNA is packed into chromosomes, and how completely it has been sequenced — and explain how to read each value as you go.
Chromosomes & ploidyhow the DNA is packaged
2n is the full chromosome count in a normal body cell; n is a gamete (egg or sperm), which carries half. Ploidy is how many complete chromosome sets each cell holds — 2× (diploid) is typical for animals, while higher levels (polyploidy) are common in plants. Click any value below to see the underlying records and sources.
Ploidydiploid inferred
Ploidy records — measured levels and diploid/polyploid inferences · click for sources
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Coordinate accuracy3% within 1 km
≤100 m 13≤1 km 3≤10 km 159>10 km 347
522 georeferenced · 155 without coordinates
Open the mapobservation + sensor677
Museum / Voucheredphysical evidence
Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.
Coordinate accuracy49% within 1 km
≤100 m 6≤1 km 40≤10 km 48
94 georeferenced · 768 without coordinates
Open the institutions mapphysical evidence862
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
Coordinate accuracy75% within 1 km
≤1 km 3≤10 km 1
4 georeferenced · 3 without coordinates
Open the mapnot free-living7
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
10Collections & institutions
Holding institutions44 of 69 geolocated
Institutions and collections holding physical, vouchered specimens of this species — click a row to fly to it on the map.
Institution
Specimens
Odawara, JP
125
Nishihara, JP
77
Kochi, JP
56
Chiba, JP
55
Bando, JP
46
Sanda, JP
39
KR
38
Tsukuba, JP
37
Nagano City, JP
33
Toyama, JP
31
Tokushima, JP
23
Nishihara, JP
18
Herbarium of the Department of Botany, University of Tokyolocation not on record
18
Osaka, JP
16
Beijing, CN
15
Taipei, TW
13
Forestry and Forest Products Research Institutelocation not on record
11
Sendai, JP
11
FFPRIlocation not on record
10
National Institute of Biological Resourceslocation not on record
10
Cambridge, US
9
Taipei, TW
8
Elocation not on record
8
Sagamihara, JP
6
Taipei, TW
6
Vancouver, CA
6
KURAlocation not on record
6
Kagoshima, JP
5
Nagatoro-machi, Chichibu-gun, JP
5
J.F.Oberlin Universitylocation not on record
5
Zhejiang Universitylocation not on record
5
TAIElocation not on record
5
Nanjing, CN
4
Xinxiang, CN
4
Santa Barbara, US
4
JP
4
KOMlocation not on record
3
Parthenon Tama History Museumlocation not on record
3
Tomioka, JP
3
Kawasaki Shi Tama Ku, JP
3
Toyota city nature sanctuarylocation not on record
3
Shanghai, CN
3
Oiso Municipal Museumlocation not on record
3
Philadelphia, US
2
Tampa, US
2
Washington, US
2
University of Stellenboschlocation not on record
2
Herbarium of South China Botanical Gardenlocation not on record
2
Angwin, US
2
Fukushima Universitylocation not on record
2
Nanjing, CN
2
Museum Of Natural And Environmental History, Shizuokalocation not on record
2
Fort Worth, US
2
Nagasaki University - Fisherieslocation not on record
2
Bangkok, TH
1
Auckland, NZ
1
Rotorua, NZ
1
Knoxville, US
1
Yangling, CN
1
Mie Prefectural Museumlocation not on record
1
Kyoto Universitylocation not on record
1
San Jose State University, Museum of Birds and Mammalslocation not on record
1
Hangzhou, CN
1
Omachi Alpine Museumlocation not on record
1
Ishikawa Museum of Natural Historylocation not on record
1
Peking Universitylocation not on record
1
ASUlocation not on record
1
Saint Louis, US
1
Honolulu, US
1
69 institutions · 830 of 862 vouchered records shown · 32 without an institution code
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
09Environmental DNA22 detections
Where the DNA of Ilex integra was picked up in samples of water, soil or air — nobody saw the organism, only its DNA left behind. A trace is a clue that the species was near, not a confirmed sighting.
Signal
Detections DNA found22
Studies independent surveys1
Countries2
Signal confidence: weakweighed across independent studies, places & mapped detections
Where its DNA was found
0 of 22 detections have coordinates
Open the map2 countries0
How strong is each trace?
DNA read depthRead counts were not reported for this species — the map shows presence only, not how strong each trace was.
Modelled climatemodelled
−15°Ctemperature across detection sites+40°C
Temperature median20.2 °C 15.2–26.3
Seasonal swing summer↔winter20.4 °C
Max temp (day)23.1 °C 16.5–27.0
Min temp (night)16.0 °C 13.7–25.6
Precipitation238 mm/mo 158–361
Air humidity62.7 % 58.4–66.9
Moisture balance111 mm/mo
Vapour deficit821 Pa 680–1,299
Wind speed3.00 m/s
Cloud cover38.4 % 33.2–44.6
CHELSA 1981–2010, ~9 km grid, at location & month of 14 detection points · median with p10–p90 · reflects where sampling happened, not only the true niche
How to read this: each dot is one detection of this species' DNA in an environmental sample. The confidence meter weighs how many independent studies and places back up the signal — one detection in one study is a hint; many across several studies is solid. Records dated before 2008 (when eDNA methods began) are treated as likely mislabeled and left off the map.
BioWikiNetmultilingual Wikipediamultilingual↗
GBIFGlobal Biodiversity Information Facility1 569 records↗
ENAEuropean Nucleotide Archive · EMBL-EBI22 eDNA detections↗
BOLD SystemsCentre for Biodiversity Genomics11 specimens↗
NCBIUS National Library of Medicinesequences↗
LOTUSNatural Products (Wikidata)compounds↗
NPASSNat. Product Activity & Species Sourcecompounds↗
GRIN TaxonomyUSDA-ARSdistribution & uses↗
Open Tree of LifeOpenTreephylogeny backbone↗
PloiDBPloidy Databasegenome & karyotype