Gasterosteus aculeatus
Linnaeus, 1758 · speciesAt a glance
Sources15 archives
Databases and archives Gasterosteus aculeatus's data was compiled from.
WikipediaWikimedia Foundation17 languages↗
Animal Diversity WebUniv. of Michigan MZspecies account↗
BioWikiNetmultilingual Wikipediamultilingual↗
GBIFGlobal Biodiversity Information Facility179 321 records↗
OBISOcean Biodiversity Information System29 350 records↗
ENAEuropean Nucleotide Archive · EMBL-EBI1 542 eDNA detections↗
BOLD SystemsCentre for Biodiversity Genomics336 specimens↗
NPASSNat. Product Activity & Species Sourcecompounds↗
Open Tree of LifeOpenTreephylogeny backbone↗
GoaTGenomes on a Tree · Sangergenome & karyotype↗
NCBIUS National Library of Medicinegenome & karyotype↗
Paleobiology DatabasePBDB consortiumfossil record↗
WikidataWikimedia Foundationstructured facts↗
Catalogue of LifeCOLtaxonomy↗
GLoBIGlobal Biotic Interactionsbiotic interactions↗Every layer below draws on the sources above — open one to explore it, or use ← → to move between tabs.
The three-spined stickleback (Gasterosteus aculeatus) is a fish native to most inland and coastal waters north of 30°N. It has long been a subject of scientific study for many reasons. It shows great morphological variation throughout its range, ideal for questions about evolution and population genetics. Many populations are anadromous (they live in seawater but breed in fresh or brackish water) and very tolerant of changes in salinity, a subject of interest to physiologists. It displays elaborate breeding behavior (defending a territory, building a nest, taking care of the eggs and fry) and it can be social (living in shoals outside the breeding season) making it a popular subject of inquiry in fish ethology and behavioral ecology. Its antipredator adaptations, host-parasite interactions, sensory physiology, reproductive physiology, and endocrinology have also been much studied. Facilitating these studies is the fact that the three-spined stickleback is easy to find in nature and easy to keep in aquaria.
No narrative description available for this taxon yet.
Size & morphology1
Life cycle & reproduction1
Habitat & environment4
Uses & economy1
Other traits3
Compounds documented for Gasterosteus aculeatus across natural-product and food-composition databases — not just the ~150 nutrients on a classic label ("nutritional dark matter").
Compound class profile5 classes
Documented compounds17 total
| Compound | Class | Amount | Source |
|---|---|---|---|
| (+)-Ursolic Acid | present | NPASS | |
| (2R,3S,4S,5R,6S)-2-[[(2S,3R,4S)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxymethyl]-6-(4-ethenylphenoxy)oxane-3,4,5-triol | present | NPASS | |
| 4-(2-Propen-1-yl)phenyl 6-O-D-apio-beta-D-furanosyl-beta-D-glucopyranoside | present | NPASS | |
| 4-Coumaric acid | present | NPASS | |
| [(1S,4aS,6S,7R,7aS)-6-acetyloxy-7-(acetyloxymethyl)-7-hydroxy-4-[[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]-4a,5,6,7a-tetrahydro-1H-cyclopenta[c]pyran-1-yl] 3-methylbutanoate | present | NPASS | |
| [(1S,4aS,7R,7aS)-7-(acetyloxymethyl)-7-hydroxy-4-[[(2R,3R,4R,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]-4a,5,6,7a-tetrahydro-1H-cyclopenta[c]pyran-1-yl] 3-methylbutanoate | present | NPASS | |
| [(1S,4aS,7R,7aS)-7-(acetyloxymethyl)-7-hydroxy-4-[[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-[[(E)-3-(4-hydroxyphenyl)prop-2-enoyl]oxymethyl]oxan-2-yl]oxymethyl]-4a,5,6,7a-tetrahydro-1H-cyclopenta[c]pyran-1-yl] 3-methylbutanoate | present | NPASS | |
| [(1S,4aS,7R,7aS)-7-(acetyloxymethyl)-7-hydroxy-4-[[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-[[(Z)-3-(4-hydroxyphenyl)prop-2-enoyl]oxymethyl]oxan-2-yl]oxymethyl]-4a,5,6,7a-tetrahydro-1H-cyclopenta[c]pyran-1-yl] 3-methylbutanoate | present | NPASS | |
| Beta-Amyrin Acetate | present | NPASS | |
| beta-Sitosterol | present | NPASS |
A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Gasterosteus aculeatus has left across the world's sequence archives.
At a glance
★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.
Besides the big genome in the nucleus, cells carry a small, circular loop of DNA inside the cell's energy factories — the mitochondria. It is inherited almost only from the mother and is a leftover from ancient bacteria that moved into the cell. The mitochondrial markers above (ND*, COX, CYTB…) are read from exactly this loop. Outer ring = one strand, inner ring = the other.
The complete instruction manual Gasterosteus aculeatus carries — its genome. We read it from three angles — how big it is, how the DNA is packed into chromosomes, and how completely it has been sequenced — and explain how to read each value as you go.
Genome sizehow big the whole instruction manual is
Measured in base pairs (bp) — the individual letters of DNA (human ≈ 3.2 Gb, a bacterium a few million). The chart places this genome on a logarithmic scale — each step to the right is ten times bigger — among reference organisms. Across species a bigger genome loosely tracks with larger cells, slower growth and lower-energy lifestyles (powered flight favours small genomes) — yet it does not imply more genes or a more advanced organism (the long-standing C-value paradox).
Sequencing statusassembly quality — how far to trust these numbers
Assembly level tells you how finished the sequence is — from fragmented contigs, through scaffolds, up to a full chromosome-level assembly. BUSCO % estimates completeness: the share of genes expected to be present that were actually found. These describe the data quality, not the organism.
How far back this lineage goes — and how we know. Everything here is measured in Ma, short for “mega-annum”: millions of years ago. The chart reads left to right like a calendar of the Earth, from the deep past on the left to today at the right edgetop to bottom like a core drilled through the Earth, from the deep past at the top down to today at the bottom.
At a glance
When this lineage existed
How to read this: the coloured strip along the bottomdown the left is the geological calendar — the standard epochs (Pliocene, Pleistocene…) every museum uses, shown so you can see which chapter of Earth's history this lineage lived in. This lineage is a young one, so the strip is zoomed in to epochs — the finer subdivisions inside a period. The solid bar is the fossil range: the span between the oldest and the youngest fossil that palaeontologists have assigned to Gasterosteus aculeatus. Above itBeside it, each dot is one dated fossil find — few enough to count, so they are drawn individually rather than as a graph. The orange marker is the DNA clock: DNA accumulates mutations at a roughly steady rate, so comparing this species' DNA with its relatives estimates when the lineage split off — independently of any fossil. Where the DNA reaches further back than the oldest fossil, the gap is hatched: the ghost lineage. It means the lineage was already out there, but has left us nothing we have dug up yet.
How it livedPBDB
Record type208 682 records
Origin
Range
Depth
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Museum / Voucheredphysical evidence
Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Holding institutions34 of 104 geolocated
Institutions and collections holding physical, vouchered specimens of this species — click a row to fly to it on the map.
| Institution | Specimens |
|---|---|
| Cambridge, US | 2 941 |
| CASlocation not on record | 1 082 |
| Vancouver, CA | 978 |
| Stockholm, SE | 904 |
| Museo civico La Terra e l'Uomo di Crocetta del Montellolocation not on record | 847 |
| University of Alberta Museumslocation not on record | 789 |
| Bonn, DE | 719 |
| Los Angeles, US | 504 |
| ICESlocation not on record | 494 |
| NTNU-VMlocation not on record | 475 |
| NSMKlocation not on record | 360 |
| New Haven, US | 329 |
| UWFClocation not on record | 259 |
| Toronto, CA | 255 |
| USFWSlocation not on record | 245 |
| Washington, US | 232 |
| Brussels, BE | 232 |
| 198 | |
| The Atlantic reference Centrelocation not on record | 154 |
| Geneva, CH | 139 |
| Edmonton, CA | 123 |
| SNSB-Zoologische Staatssammlung Münchenlocation not on record | 113 |
| FishBaselocation not on record | 106 |
| Helsinki, FI | 103 |
| Oregon State Universitylocation not on record | 96 |
| Champaign, US | 88 |
| Hakai Institutelocation not on record | 72 |
| Muzeum i Instytut Zoologii Polskiej Akademii Nauklocation not on record | 66 |
| Ann Arbor, US | 66 |
| Copenhagen, DK | 64 |
| Paris, FR | 51 |
| Tromsø, NO | 46 |
| Ohio State University - Fish Division, Columbus, OH (OSUM)location not on record | 40 |
| North Carolina Museum of Natural Scienceslocation not on record | 39 |
| KULlocation not on record | 39 |
| NHMOlocation not on record | 37 |
| RWSlocation not on record | 35 |
| MZLUlocation not on record | 34 |
| Maurice Lamontagne Institutelocation not on record | 33 |
| Tallinn, EE | 33 |
| BioFokuslocation not on record | 32 |
| Florida Museum of Natural History- Zoology, Paleontology & Paleobotanylocation not on record | 28 |
| Frankfurt am Main | 26 |
| Stockholm, SE | 24 |
| University of California San Diegolocation not on record | 22 |
| VUB/UGentlocation not on record | 19 |
| Natural History Museum Rotterdamlocation not on record | 19 |
| Chicago, US | 17 |
| Zoologisches Museum Hamburglocation not on record | 17 |
| Nova Scotia Museumlocation not on record | 16 |
| ICM-CSIClocation not on record | 16 |
| University of Minnesota, James Ford Bell Museum of Natural Historylocation not on record | 16 |
| 730location not on record | 14 |
| University of Alabamalocation not on record | 13 |
| Research Institute for Agriculture, Fisheries and Food (ILVO)location not on record | 11 |
| Nizhyn Gogol State Universitylocation not on record | 11 |
| Zoological Museum, Moscow Lomonosov State Universitylocation not on record | 11 |
| MNHAHlocation not on record | 10 |
| South Kensington, GB | 10 |
| Bergen, NO | 10 |
| PNHSlocation not on record | 9 |
| DASSHlocation not on record | 9 |
| Berkeley, US | 9 |
| VUB/Ugentlocation not on record | 8 |
| Johanna Bergkvistlocation not on record | 7 |
| Kuopio, FI | 7 |
| University of Victorialocation not on record | 7 |
| Oulu, FI | 6 |
| Wuzhou, CN | 6 |
| South African Institute for Aquatic Biodiversitylocation not on record | 6 |
| Central Michigan University Museum of Cultural and Natural Historylocation not on record | 6 |
| DOI/FWS, Kenai National Wildlife Refugelocation not on record | 5 |
| ZSMlocation not on record | 5 |
| Toyama, JP | 5 |
| München, DE | 4 |
| RBINS-Scientific Heritagelocation not on record | 4 |
| Philadelphia, US | 3 |
| Texas Memorial Museum, Texas Natural History Collectionlocation not on record | 3 |
| Tilburg, NL | 3 |
| Vlaams Instituut voor de Zeelocation not on record | 3 |
| National Marine Biodiversity Institute of Korealocation not on record | 3 |
| Barcelona, ES | 2 |
| Ilvolocation not on record | 2 |
| Istituto Superiore per la Protezione e la Ricerca Ambientalelocation not on record | 2 |
| IfAÖ Institut für Angewandte Ökosystemforschung GmbHlocation not on record | 2 |
| Museu Nacional/Universidade Federal do Rio de Janeirolocation not on record | 2 |
| Gifu prefectural Museumlocation not on record | 2 |
| Museo universitario di Scienze della Terra di Romalocation not on record | 2 |
| Moore Laboratory of Zoology, Occidental Collegelocation not on record | 2 |
| Royal Museum for Central Africalocation not on record | 1 |
| University of Texas Biodiversity Collections (UTBC)location not on record | 1 |
| ASUlocation not on record | 1 |
| Louisiana State University, Museum of Zoologylocation not on record | 1 |
| Montgomery, US | 1 |
| IZWOlocation not on record | 1 |
| CLOlocation not on record | 1 |
| Natural History Museum of the Iberian Peninsula - NatMIP ("Museu de História Natural da Península Ibérica")location not on record | 1 |
| ISUAlocation not on record | 1 |
| SLU Artdatabankenlocation not on record | 1 |
| Natural History Museum, Londonlocation not on record | 1 |
| TraFi - Finnish Transport Safety Agencylocation not on record | 1 |
| University of Nebraskalocation not on record | 1 |
| PUC-RSlocation not on record | 1 |
| Texas Cooperative Wildlife Collectionlocation not on record | 1 |
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
Where the DNA of Gasterosteus aculeatus was picked up in samples of water, soil or air — nobody saw the organism, only its DNA left behind. A trace is a clue that the species was near, not a confirmed sighting.
Signal
Where its DNA was found
How strong is each trace?
Modelled climatemodelled
How to read this: each dot is one detection of this species' DNA in an environmental sample. The confidence meter weighs how many independent studies and places back up the signal — one detection in one study is a hint; many across several studies is solid. Records dated before 2008 (when eDNA methods began) are treated as likely mislabeled and left off the map.