Fragaria nipponica

Makino · species

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Plantae/Tracheophyta/Magnoliopsida/Rosales/Rosaceae/Fragaria

At a glance

Occurrence records404

Data sources12

Biological traits7

DNA specimens6

eDNA detections5

Sources12 archives

Databases and archives Fragaria nipponica's data was compiled from.

BioWikiNetmultilingual Wikipediamultilingual↗

GBIFGlobal Biodiversity Information Facility404 records↗

ENAEuropean Nucleotide Archive · EMBL-EBI5 eDNA detections↗

BOLD SystemsCentre for Biodiversity Genomics6 specimens↗

LOTUSNatural Products (Wikidata)compounds↗

GRIN TaxonomyUSDA-ARSdistribution & uses↗

Open Tree of LifeOpenTreephylogeny backbone↗

CCDBChromosome Counts DB · Tel Aviv U.genome & karyotype↗

GoaTGenomes on a Tree · Sangergenome & karyotype↗

NCBIUS National Library of Medicinegenome & karyotype↗

PloiDBPloidy Databasegenome & karyotype

Tree of SexTree of Sex Consortiumgenome & karyotype↗

On this page7 sections

Every layer below draws on the sources above — open one to explore it, or use ← → to move between tabs.

NarrativeWikipediaarticle

Traits & measurements3 literature sources7 traits

Chemical compositionLOTUS4 compounds

Occurrence & distributionGBIF404 records

Environmental DNA1 datasets · 0 countries5 detections

DNA & barcodingBOLD6 specimens

Genome at a glanceCCDB · GoaT · TreeOfSex≈206 Mbp

01Narrative

Fragaria nipponica, ou Fraisier du Japon, est une espèce de plantes à fleurs de la famille des Rosaceae. C'est une plante herbacée vivace endémique du Japon.

No narrative description available for this taxon yet.

02Traits & measurements

SourcesWCVPGIFTTRY

Life cycle & reproduction3

Life formperennial

Life spanperennial

Raunkiær life formhemicryptophyte

Habitat & environment4

Climatetemperate

Epiphyteterrestrial

Growth formherb

Woodinessnon-woody

03Chemical composition4 compounds

Compounds documented for Fragaria nipponica across natural-product and food-composition databases — not just the ~150 nutrients on a classic label ("nutritional dark matter").

Compound class profile2 classes

Gallotannins3

Cinnamic acids and derivatives1

Documented compounds4 total

Tissue Source Quantified only

Compound	Amount	Source
Agrimoniin	present	LOTUS
Casuarictin	present	LOTUS
Pedunculagin	present	LOTUS
trans-5-O-caffeoyl-D-quinate	present	LOTUS

05DNA & barcoding6 specimens

A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Fragaria nipponica has left across the world's sequence archives.

At a glance

DNA specimens6

Marker genes4

eDNA detections5

Countries2

Marker genes sequenced

★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.

★COI-5P★matK★rbcL★ITS

animal barcodeplant barcodefungal barcode

06Genome at a glanceCCDB · GoaT · TreeOfSex · NCBI

The complete instruction manual Fragaria nipponica carries — its genome. We read it from three angles — how big it is, how the DNA is packed into chromosomes, and how completely it has been sequenced — and explain how to read each value as you go.

Genome sizehow big the whole instruction manual is

Genome size≈206 414 839 bp assembly estimate

Measured in base pairs (bp) — the individual letters of DNA (human ≈ 3.2 Gb, a bacterium a few million). The chart places this genome on a logarithmic scale — each step to the right is ten times bigger — among reference organisms. Across species a bigger genome loosely tracks with larger cells, slower growth and lower-energy lifestyles (powered flight favours small genomes) — yet it does not imply more genes or a more advanced organism (the long-standing C-value paradox).

BACTERIUM Carsonella ruddii0.00016 Gb

FUNGUS0.04 Gb

THIS GENOME Fragaria nipponica0.21 Gb

INSECT0.25 Gb

HUMAN3.2 Gb

WHEAT17 Gb

FERN Tmesipteris160.45 Gb

Chromosomes & ploidyhow the DNA is packaged

2n is the full chromosome count in a normal body cell; n is a gamete (egg or sperm), which carries half. Ploidy is how many complete chromosome sets each cell holds — 2× (diploid) is typical for animals, while higher levels (polyploidy) are common in plants. Click any value below to see the underlying records and sources.

Chromosomes2n = 14 n = 7

Ploidydiploid inferred

Chromosome records14–282n range14median14mode13records

Chromosome-count records — grouped by value · 2n = full set, n = gamete · click a value for sources & references

2n 1411×GoaT · Tree of Sex Database · CCDB · ipcn-api-dl · CCDB · book-atlas-flowering-plants +1

GoaT · Tree of Sex Database — ↗

CCDB · ipcn-api-dl — Probatova, N. S., A. P. Sokolovskaya & E. G. Rudyka. 1989. Chromosome numbers in some species of vascular plants from Kunashir Island (the Kuril Islands). Bot. Žhurn. (Moscow & Leningrad) 74: 1675–1678.

CCDB · ipcn-api-dl — Oda, Y. & S. Nisitani. 1989. Chromosome numbers of strawberries native to Japan. CIS Chromosome Inform. Serv. 47: 26–27.

CCDB · ipcn-api-dl — Iwatsubo, Y. & N. Naruhashi. 1989. Karyotypes of three species of Fragaria (Rosaceae). Cytologia 54: 493–497.

CCDB · book-atlas-flowering-plants — Lilienfeld 1936

TreeOfSex · plant — Goldblatt1979 ↗

2n 282×CCDB · ipcn-api-dl · CCDB · book-atlas-flowering-plants

CCDB · ipcn-api-dl — Probatova, N. S., E. G. Rudyka & A. P. Sokolovskaya. 1996. Chromosome numbers in synanthropic plants from the Russian Far East. Bot. Žhurn. (Moscow & Leningrad) 81(5): 98–101.

CCDB · book-atlas-flowering-plants — R. Yamazaki 1936

Ploidy records — measured levels and diploid/polyploid inferences · click for sources

diploid inferred1×PloiDB · genus-scale

PloiDB · genus-scale — chromEvol; reliability=1.000 ↗

Sequencing statusassembly quality — how far to trust these numbers

Assembly level tells you how finished the sequence is — from fragmented contigs, through scaffolds, up to a full chromosome-level assembly. BUSCO % estimates completeness: the share of genes expected to be present that were actually found. These describe the data quality, not the organism.

Assembly levelScaffold

Completeness41.1% BUSCO

08Occurrence & distribution

Record type404 records

Wild obs. + sensor95

Museum / vouchered284

Other25

Origin

Native17

Introduced40

Range

Area of Occupancy AOO944 km²

Wildobservation + sensor

Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.

Coordinate accuracy76% within 1 km

≤100 m 21≤1 km 44≤10 km 8>10 km 12

85 georeferenced · 10 without coordinates

Open the mapobservation + sensor95

Museum / Voucheredphysical evidence

Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.

Coordinate accuracy3% within 1 km

≤1 km 3≤10 km 92

95 georeferenced · 189 without coordinates

Open the institutions mapphysical evidence284

Wildobservation + sensor

Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.

10Collections & institutions

Holding institutions19 of 26 geolocated

Institutions and collections holding physical, vouchered specimens of this species — click a row to fly to it on the map.

Institution	Specimens
Shinshu Universitylocation not on record	87
Tomioka, JP	34
Tsukuba, JP	30
Odawara, JP	30
Nagano City, JP	28
Nagatoro-machi, Chichibu-gun, JP	14
Yangling, CN	10
Sagamihara, JP	8
Omachi Alpine Museumlocation not on record	7
Bando, JP	6
Wuhan, CN	4
Otaru, JP	4
J.F.Oberlin Universitylocation not on record	3
Sanda, JP	3
Sugadaira Research Station, Mountain Science Center, University of Tsukubalocation not on record	2
Kushiro City Museumlocation not on record	2
Kochi, JP	2
Kew, GB	1
College of the Atlantic, Museumlocation not on record	1
Sendai, JP	1
Toyama, JP	1
Nishihara, JP	1
Chiba, JP	1
Olocation not on record	1
Lanzhou, CN	1
Madison, US	1

26 institutions · 283 of 284 vouchered records shown · 1 without an institution code

09Environmental DNA5 detections

Where the DNA of Fragaria nipponica was picked up in samples of water, soil or air — nobody saw the organism, only its DNA left behind. A trace is a clue that the species was near, not a confirmed sighting.

Signal

Detections DNA found5

Studies independent surveys1

Signal confidence: weakweighed across independent studies, places & mapped detections

Where its DNA was found

0 of 5 detections have coordinates

Open the map0 countries0

How strong is each trace?

DNA read depthRead counts were not reported for this species — the map shows presence only, not how strong each trace was.

How to read this: each dot is one detection of this species' DNA in an environmental sample. The confidence meter weighs how many independent studies and places back up the signal — one detection in one study is a hint; many across several studies is solid. Records dated before 2008 (when eDNA methods began) are treated as likely mislabeled and left off the map.

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