Coprinellus micaceus
(Bull.) Vilgalys, Hopple & Jacq.Johnson · speciesAt a glance
Sources11 archives
Databases and archives Coprinellus micaceus's data was compiled from.
WikipediaWikimedia Foundation10 languages↗
BioWikiNetmultilingual Wikipediamultilingual↗
GBIFGlobal Biodiversity Information Facility39 131 records↗
ENAEuropean Nucleotide Archive · EMBL-EBI2 031 eDNA detections↗
BOLD SystemsCentre for Biodiversity Genomics39 specimens↗
NCBIUS National Library of Medicinesequences↗
LOTUSNatural Products (Wikidata)compounds↗
NPASSNat. Product Activity & Species Sourcecompounds↗
Open Tree of LifeOpenTreephylogeny backbone↗
GoaTGenomes on a Tree · Sangergenome & karyotype↗
GLoBIGlobal Biotic Interactionsbiotic interactions↗Every layer below draws on the sources above — open one to explore it, or use ← → to move between tabs.
Coprinellus micaceus is a common species of mushroom-forming fungus in the family Psathyrellaceae with a cosmopolitan distribution. The fruit bodies of the saprobe typically grow in clusters on or near rotting hardwood tree stumps or underground tree roots. Depending on their stage of development, the tawny-brown mushroom caps may range in shape from oval to bell-shaped to convex, and reach diameters up to 3 cm. The caps, marked with fine radial or linear grooves that extend nearly to the center, rest atop whitish stipes up to 10 cm long. In young specimens, the entire cap surface is coated with a fine layer of reflective mica-like cells that provide the inspiration for both the mushroom's species name and the common names mica cap, shiny cap, and glistening inky cap. Although small and with thin flesh, the mushrooms are usually bountiful, as they typically grow in dense clusters. A few hours after collection, the gills will begin to slowly dissolve into a black, inky, spore-laden liquid—an enzymatic process called autodigestion or deliquescence. The fruit bodies are edible before the gills blacken and dissolve, and cooking will stop the autodigestion process. The microscopic characteristics and cytogenetics of C. micaceus are well known, and it has been used frequently as a model organism to study cell division and meiosis in Basidiomycetes. Chemical analysis of the fruit bodies has revealed the presence of antibacterial and enzyme-inhibiting compounds. Formerly known as Coprinus micaceus, the species was transferred to Coprinellus in 2001 as phylogenetic analyses provided the impetus for a reorganization of the many species formerly grouped together in the genus Coprinus. Based on external appearance, C. micaceus is virtually indistinguishable from C. truncorum, and it has been suggested that many reported collections of the former may be of the latter.
No narrative description available for this taxon yet.
No structured trait data for this taxon yet.
Compounds documented for Coprinellus micaceus across natural-product and food-composition databases — not just the ~150 nutrients on a classic label ("nutritional dark matter").
Compound class profile5 classes
Documented compounds54 total
| Compound | Class | Amount | Source |
|---|---|---|---|
| (-)-Carnitine | present | LOTUS | |
| (2R,3R)-2,5,7-trihydroxyspiro[2H-chromene-3,4'-9,11-dioxatricyclo[6.3.0.03,6]undeca-1(8),2,6-triene]-4-one | present | NPASS | |
| (3E)-3-[(3,4-dihydroxyphenyl)methylidene]-5,7-dihydroxy-6-methoxychromen-4-one | present | NPASS | |
| (3R)-3',5,7-trihydroxy-4'-methoxyspiro[2H-chromene-3,7'-bicyclo[4.2.0]octa-1,3,5-triene]-4-one | present | NPASS | |
| (3R)-5,7-dihydroxy-3-[(3-hydroxy-4-methoxyphenyl)methyl]-8-methoxy-2,3-dihydrochromen-4-one | present | NPASS | |
| (3R)-5,7-dihydroxy-3-[(4-hydroxyphenyl)methyl]-8-methoxy-2,3-dihydrochromen-4-one | present | NPASS | |
| (3S)-5,7-dihydroxy-3-[(3-hydroxy-4-methoxyphenyl)methyl]-2,3-dihydrochromen-4-one | present | NPASS | |
| (3S)-5,7-dihydroxy-3-[(3-hydroxy-4-methoxyphenyl)methyl]-6-methoxy-2,3-dihydrochromen-4-one | present | NPASS | |
| (3S)-5,7-dihydroxy-3-[(4-hydroxyphenyl)methyl]-2,3-dihydrochromen-4-one | present | NPASS | |
| (3S)-5,7-dihydroxy-3-[(4-hydroxyphenyl)methyl]-6-methoxy-2,3-dihydrochromen-4-one | present | NPASS |
A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Coprinellus micaceus has left across the world's sequence archives.
At a glance
★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.
The complete instruction manual Coprinellus micaceus carries — its genome. We read it from three angles — how big it is, how the DNA is packed into chromosomes, and how completely it has been sequenced — and explain how to read each value as you go.
Genome sizehow big the whole instruction manual is
Measured in base pairs (bp) — the individual letters of DNA (human ≈ 3.2 Gb, a bacterium a few million). The chart places this genome on a logarithmic scale — each step to the right is ten times bigger — among reference organisms. Across species a bigger genome loosely tracks with larger cells, slower growth and lower-energy lifestyles (powered flight favours small genomes) — yet it does not imply more genes or a more advanced organism (the long-standing C-value paradox).
Sequencing statusassembly quality — how far to trust these numbers
Assembly level tells you how finished the sequence is — from fragmented contigs, through scaffolds, up to a full chromosome-level assembly. BUSCO % estimates completeness: the share of genes expected to be present that were actually found. These describe the data quality, not the organism.
Record type39 131 records
Origin
Range
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Museum / Voucheredphysical evidence
Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Holding institutions45 of 92 geolocated
Institutions and collections holding physical, vouchered specimens of this species — click a row to fly to it on the map.
| Institution | Specimens |
|---|---|
| Helsinki, FI | 116 |
| Olocation not on record | 48 |
| San Sebastián, ES | 35 |
| Copenhagen, DK | 35 |
| Kew, GB | 30 |
| SLU Artdatabankenlocation not on record | 29 |
| Karlsruhe, DE | 25 |
| Görlitz, DE | 24 |
| Uniwersytet Łódzkilocation not on record | 22 |
| Museo civico di Storia naturale Giacomo Doria di Genova | Giacomo Doria Natural History Museum in Genoalocation not on record | 17 |
| Denver, US | 16 |
| St. Paul, US | 13 |
| WU-MYClocation not on record | 12 |
| Museo Entomologico de Leonlocation not on record | 12 |
| Tartu, EE | 11 |
| Chicago, US | 10 |
| Vitoria, ES | 10 |
| BDBClocation not on record | 9 |
| Toronto, CA | 9 |
| Warsaw, PL | 9 |
| Université de Montréal Biodiversity Centrelocation not on record | 8 |
| Göteborg, SE | 8 |
| Philadelphia, US | 7 |
| V. N. Karazin National Universitylocation not on record | 7 |
| Bardejov, SK | 6 |
| Universidade Federale do Rio Grande do Sullocation not on record | 6 |
| Museum Ludovicae Ulricae, Zoology Institute of the University of Uppsalalocation not on record | 6 |
| Trondheim, NO | 5 |
| National Museums of Kenyalocation not on record | 5 |
| Canberra, AU | 5 |
| Brisbane, AU | 5 |
| Kensington, AU | 5 |
| Kyiv, UA | 5 |
| Leicester, GB | 5 |
| Senckenberg Gesellschaft für Naturforschung: Senckenberg Forschungsinstitut und Naturmuseumlocation not on record | 5 |
| Universidade de Lisboa, Museu Bocagelocation not on record | 5 |
| Gujarat Biodiversity Gene Banklocation not on record | 4 |
| TENN-Flocation not on record | 4 |
| Osaka, JP | 4 |
| National Institute of Biological Resourceslocation not on record | 4 |
| Uniwersytet Marii Curie-Skłodowskiejlocation not on record | 4 |
| Vancouver, CA | 4 |
| LDlocation not on record | 4 |
| Zürich, CH | 4 |
| Salzburg, AT | 4 |
| TROMlocation not on record | 4 |
| University of Tennessee at Chattanoogalocation not on record | 3 |
| WTUlocation not on record | 3 |
| TFC Miclocation not on record | 3 |
| University of Oslo, Natural History Museumlocation not on record | 3 |
| BRNUlocation not on record | 3 |
| Kathmandu, NP | 3 |
| Tomioka, JP | 3 |
| CJBGlocation not on record | 3 |
| Bando, JP | 3 |
| IB FRC Komi SC UB RASlocation not on record | 3 |
| Paris, FR | 2 |
| TUR-Alocation not on record | 2 |
| Laramie, US | 2 |
| Natural History Museum, Tribhuvan Universitylocation not on record | 2 |
| National Mushroom Centre, Department of Agriculture, Ministry of Agriculture and Livestock, Bhutanlocation not on record | 2 |
| Ann Arbor, US | 2 |
| Natural History Museum Rotterdamlocation not on record | 2 |
| ARMS-MBONlocation not on record | 2 |
| Colorado State Universitylocation not on record | 2 |
| Lausanne, CH | 2 |
| Cincinnati, US | 2 |
| Turku, FI | 2 |
| Oulu, FI | 2 |
| Adam Mickiewicz University in Poznańlocation not on record | 2 |
| Logan, US | 2 |
| Kuopio, FI | 2 |
| California State University, East Baylocation not on record | 1 |
| Centre for Biodiversity Genomicslocation not on record | 1 |
| FLASlocation not on record | 1 |
| Uppsala, SE | 1 |
| Research Collection of Trey Richardslocation not on record | 1 |
| Hobart, AU | 1 |
| UAclocation not on record | 1 |
| IPA/SPlocation not on record | 1 |
| Stockholm, SE | 1 |
| Youngstown State Universitylocation not on record | 1 |
| Gijón, ES | 1 |
| Biodiversity Institute of Ontariolocation not on record | 1 |
| Pontificia Universidad Javeriana (PUJ)location not on record | 1 |
| Durham, US | 1 |
| Acadia Universitylocation not on record | 1 |
| GJOlocation not on record | 1 |
| CA | 1 |
| Centro de Estudios Superiores del Estado de Sonoralocation not on record | 1 |
| Staten Island, US | 1 |
| JA-CAGPDS-CAMlocation not on record | 1 |
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
Where the DNA of Coprinellus micaceus was picked up in samples of water, soil or air — nobody saw the organism, only its DNA left behind. A trace is a clue that the species was near, not a confirmed sighting.
Signal
Where its DNA was found
How strong is each trace?
Modelled climatemodelled
How to read this: each dot is one detection of this species' DNA in an environmental sample. The confidence meter weighs how many independent studies and places back up the signal — one detection in one study is a hint; many across several studies is solid. Records dated before 2008 (when eDNA methods began) are treated as likely mislabeled and left off the map.