Citrus reticulata
Blanco · speciesAt a glance
Sources16 archives
Databases and archives Citrus reticulata's data was compiled from.
WikipediaWikimedia Foundation21 languages↗
BioWikiNetmultilingual Wikipediamultilingual↗
GBIFGlobal Biodiversity Information Facility1 426 records↗
ENAEuropean Nucleotide Archive · EMBL-EBI29 eDNA detections↗
BOLD SystemsCentre for Biodiversity Genomics35 specimens↗
NCBIUS National Library of Medicinesequences↗
dukesphytochemcompounds
FooDBThe Metabolomics Innovation Centrecompounds↗
foodatlascompounds
LOTUSNatural Products (Wikidata)compounds↗
NPASSNat. Product Activity & Species Sourcecompounds↗
GRIN TaxonomyUSDA-ARSdistribution & uses↗
Open Tree of LifeOpenTreephylogeny backbone↗
CCDBChromosome Counts DB · Tel Aviv U.genome & karyotype↗
GoaTGenomes on a Tree · Sangergenome & karyotype↗
PloiDBPloidy Databasegenome & karyotypeEvery layer below draws on the sources above — open one to explore it, or use ← → to move between tabs.
The tachibana orange (Citrus tachibana, or Citrus reticulata tachibana) is a variety of mandarin orange, a citrus fruit. They grow wild in the forests of Japan and are referred to in the poetry of the early Japanese and Ryukyu Islands kingdoms.and Supplement The Tanaka System assigns them their own species, while the Swingle System places them in the same species with other mandarin oranges. Genomic analysis has shown tachibana oranges to be a constellation of distinct natural F1 hybrids that cross the pure Ryukyu Island mandarin C. ryukyuensis with mainland Asian C. reticulata that was itself a hybrid of northern and southern subspecies, but also contained some prior Ryukyu mandarin introgression. They lack the pomelo introgression found in the closely-related domesticated mandarin oranges of mainland Asia, though they have a mainland-mandarin-derived transposable element insertion that causes them to reproduce asexually by apomixis, unlike their sexually-reproducing Ryukyu mandarin parent. This distinctive island parent is estimated to have diverged from mainland Asian mandarins, probably arising before 2 million years ago near where its mandarin cousins would later be domesticated in the Nanling Mountains of China, and likely spread to the islands over land bridges formed during Pleistocene glacial maxima, Rising sea levels provided the isolation that led to speciation, then either a subsequent fall in sea level or oceanic dispersal by rafting reestablished contact to allow for natural hybridization between the island and mainland mandarins between 40,000 and 200,000 years ago, giving rise to the tachibana oranges. The fruit is extremely bitter and thus nearly inedible.
No narrative description available for this taxon yet.
Size & morphology2
Life cycle & reproduction3
Habitat & environment7
Physiology & chemistry3
Compounds documented for Citrus reticulata across natural-product and food-composition databases — not just the ~150 nutrients on a classic label ("nutritional dark matter").
Compound class profile5 classes
Documented compounds6 940 total
| Compound | Class | Amount | Source |
|---|---|---|---|
| CARBOHYDRATES | 901,914 ppm | DukesPhytochem | |
| WATER | 886,000 ppm | DukesPhytochem | |
| GAMMA-TERPINENE | 201,500 ppm | DukesPhytochem | |
| P-CYMENE | 162,900 ppm | DukesPhytochem | |
| SUGARS | 113,600 ppm | DukesPhytochem | |
| LINALOOL | 95,500 ppm | DukesPhytochem | |
| PROTEIN | 80,228 ppm | DukesPhytochem | |
| TERPINEN-4-OL | 71,300 ppm | DukesPhytochem | |
| HESPERIDIN | 47,800 ppm | DukesPhytochem | |
| FIBER | 43,000 ppm | DukesPhytochem |
A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Citrus reticulata has left across the world's sequence archives.
At a glance
★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.
The complete instruction manual Citrus reticulata carries — its genome. We read it from three angles — how big it is, how the DNA is packed into chromosomes, and how completely it has been sequenced — and explain how to read each value as you go.
Genome sizehow big the whole instruction manual is
Measured in base pairs (bp) — the individual letters of DNA (human ≈ 3.2 Gb, a bacterium a few million). The chart places this genome on a logarithmic scale — each step to the right is ten times bigger — among reference organisms. Across species a bigger genome loosely tracks with larger cells, slower growth and lower-energy lifestyles (powered flight favours small genomes) — yet it does not imply more genes or a more advanced organism (the long-standing C-value paradox).
Chromosomes & ploidyhow the DNA is packaged
2n is the full chromosome count in a normal body cell; n is a gamete (egg or sperm), which carries half. Ploidy is how many complete chromosome sets each cell holds — 2× (diploid) is typical for animals, while higher levels (polyploidy) are common in plants. Click any value below to see the underlying records and sources.
2n 1836×GoaT · Kew Plant DNA C-values Database · CCDB · ipcn-api-dl · CCDB · book-atlas-flowering-plants +1
diploid1×GoaT · Kew Plant DNA C-values Database
diploid inferred1×PloiDB · genus-scale
Sequencing statusassembly quality — how far to trust these numbers
Assembly level tells you how finished the sequence is — from fragmented contigs, through scaffolds, up to a full chromosome-level assembly. BUSCO % estimates completeness: the share of genes expected to be present that were actually found. These describe the data quality, not the organism.
How far back this lineage goes — and how we know. Everything here is measured in Ma, short for “mega-annum”: millions of years ago. The chart reads left to right like a calendar of the Earth, from the deep past on the left to today at the right edgetop to bottom like a core drilled through the Earth, from the deep past at the top down to today at the bottom.
At a glance
When this lineage existed
How to read this: the coloured strip along the bottomdown the left is the geological calendar — the standard epochs (Pliocene, Pleistocene…) every museum uses, shown so you can see which chapter of Earth's history this lineage lived in. This lineage is a young one, so the strip is zoomed in to epochs — the finer subdivisions inside a period. The orange marker is the DNA clock: DNA accumulates mutations at a roughly steady rate, so comparing this species' DNA with its relatives estimates when the lineage split off — independently of any fossil.
Record type1 426 records
Origin
Range
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Museum / Voucheredphysical evidence
Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Holding institutions66 of 136 geolocated
Institutions and collections holding physical, vouchered specimens of this species — click a row to fly to it on the map.
| Institution | Specimens |
|---|---|
| Beijing, CN | 142 |
| Saint Louis, US | 55 |
| Guilin, CN | 54 |
| Chapingo, MX | 39 |
| Guangzhou, CN | 38 |
| Durango, MX | 35 |
| National Biodiversity Institute, Costa Ricalocation not on record | 17 |
| Smithfield, AU | 17 |
| Wuhan, CN | 15 |
| Canberra, AU | 13 |
| FJIDClocation not on record | 11 |
| Mérida, MX | 11 |
| Tapachula, MX | 9 |
| Chengdu, CN | 9 |
| Mexico City, MX | 9 |
| Christchurch, NZ | 7 |
| Centro de Investigación en Biodiversidad y Conservación, Universidad Autónoma del Estado de Moreloslocation not on record | 7 |
| Riverside, US | 7 |
| Instituto Amazónico de Investigaciones Científicas - SINCHIlocation not on record | 7 |
| BAYLUlocation not on record | 7 |
| Institut fur Allgemeine Mikrobiologielocation not on record | 6 |
| Leiden University Medical Centerlocation not on record | 6 |
| Kunming, CN | 6 |
| Universidad de Antioquia (UdeA)location not on record | 5 |
| Auckland, NZ | 5 |
| Area de Conservacion Guanacastelocation not on record | 4 |
| San José, CR | 4 |
| Florida Museum of Natural History- Zoology, Paleontology & Paleobotanylocation not on record | 4 |
| Miami, US | 4 |
| Yaoundé, CM | 4 |
| Mexico City, MX | 4 |
| UEPAlocation not on record | 4 |
| Bronx, US | 4 |
| PUC-RSlocation not on record | 4 |
| Austin, US | 3 |
| Chongqing Museumlocation not on record | 3 |
| Barcelona, ES | 3 |
| Laboratorio de Ictiologialocation not on record | 3 |
| Universidad de Caldas (UCaldas)location not on record | 3 |
| Universidad Católica de Oriente (UCO)location not on record | 3 |
| Puerto Ayora, EC | 3 |
| Instituto de Investigación de Recursos Biológicos Alexander von Humboldt (IAvH)location not on record | 2 |
| Institute for Agricultural Bacteriology and Fermentation Biologylocation not on record | 2 |
| Museo naturalistico del Frignano Ferruccio Minghellilocation not on record | 2 |
| Phyletisches Museum Jenalocation not on record | 2 |
| URCAlocation not on record | 2 |
| BISHlocation not on record | 2 |
| Kew, GB | 2 |
| León, NI | 2 |
| UFRRJlocation not on record | 2 |
| Universidade Federal do Rio Grande do Nortelocation not on record | 2 |
| UNICAMPlocation not on record | 2 |
| Chongqing Natural History Museumlocation not on record | 2 |
| Salvador, BR | 2 |
| San Jose State University, Museum of Birds and Mammalslocation not on record | 2 |
| Honolulu, US | 2 |
| University of Stellenboschlocation not on record | 2 |
| Cascavel, BR | 2 |
| Austin, US | 2 |
| Montecillo, Texcoco, MX | 2 |
| Riobamba, EC | 2 |
| Wlocation not on record | 2 |
| Moscow State Universitylocation not on record | 2 |
| Chicago, US | 2 |
| Gump Stationlocation not on record | 2 |
| CASlocation not on record | 1 |
| Río Palenque Science Centerlocation not on record | 1 |
| Corporación Autónoma Regional Para la Defensa de la Meseta de Bucaramanga (CDMB)location not on record | 1 |
| Nanjing, CN | 1 |
| Universidad Industrial de Santander (UIS)location not on record | 1 |
| Puebla, MX | 1 |
| Station d'Ecologie de Lamtolocation not on record | 1 |
| Universidad Juárez Autónoma de Tabascolocation not on record | 1 |
| La Paz, BO | 1 |
| Museo Entomologico de Leonlocation not on record | 1 |
| UNESClocation not on record | 1 |
| Kyoto Universitylocation not on record | 1 |
| USP-IBlocation not on record | 1 |
| Museu Nacional, Universidade Federal do Rio de Janeirolocation not on record | 1 |
| UEMlocation not on record | 1 |
| Walla Walla, US | 1 |
| JBRJlocation not on record | 1 |
| Loja, EC | 1 |
| Guasave, MX | 1 |
| UNESP, Campus São José Rio Prêtolocation not on record | 1 |
| Blumenau, BR | 1 |
| Corrientes, AR | 1 |
| Jataí / Setor Industrial, BR | 1 |
| Foz do Iguaçu, BR | 1 |
| Tampa, US | 1 |
| BDBClocation not on record | 1 |
| Valparaiso, CL | 1 |
| Jardín Botánico de Cartagena "Guillermo Piñeres" (JBC)location not on record | 1 |
| València, ES | 1 |
| Uniwersytet Jagiellońskilocation not on record | 1 |
| St. Augustine, TT | 1 |
| Uniwersytet Śląski w Katowicachlocation not on record | 1 |
| Frankfurt am Main | 1 |
| Seychelles National Herbariumlocation not on record | 1 |
| Seoul, KR | 1 |
| Dresden, DE | 1 |
| San Francisco de Campeche, MX | 1 |
| Dekalb, US | 1 |
| Altos de Pipe, VE | 1 |
| BClocation not on record | 1 |
| Campo Mourão, BR | 1 |
| Plocation not on record | 1 |
| Parc Botanique et Zoologique de Tsimbazaza (PBZT)location not on record | 1 |
| MEXUlocation not on record | 1 |
| Jardín Botánico José Celestino Mutis (JBBJCM)location not on record | 1 |
| Herbario Selva Central Oxapampa - estación biológica del Jardín Botánico de Missourilocation not on record | 1 |
| Dr. Panjabrao Deshmukh Krishi Vidyapeethlocation not on record | 1 |
| HAWlocation not on record | 1 |
| ESALQlocation not on record | 1 |
| Pontifícia Universidade Católica do Paranálocation not on record | 1 |
| Jiujiang Forestry Institutelocation not on record | 1 |
| Vitoria, ES | 1 |
| UFOPlocation not on record | 1 |
| Xiamen, CN | 1 |
| Mexico City, MX | 1 |
| Santa Cruz de la Sierra, BO | 1 |
| UFBAlocation not on record | 1 |
| Antiguo Cuscatlán, SV | 1 |
| Institut und Museum fuer Geologie und Palaeontologielocation not on record | 1 |
| Vancouver, CA | 1 |
| Seropédica, BR | 1 |
| Universidad del Quindío (UniQuindío)location not on record | 1 |
| GBS RAN - Glavny Botanichesky Sad Rossijskoj Akademii Nauklocation not on record | 1 |
| UNEMATlocation not on record | 1 |
| FUNEDlocation not on record | 1 |
| Aarhus, DK | 1 |
| South Kensington, GB | 1 |
| UTFPR-CPlocation not on record | 1 |
| Ojo, NG | 1 |
| Palmerston, AU | 1 |
| University of Hawaii at Manoalocation not on record | 1 |
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
Where the DNA of Citrus reticulata was picked up in samples of water, soil or air — nobody saw the organism, only its DNA left behind. A trace is a clue that the species was near, not a confirmed sighting.
Signal
Where its DNA was found
How strong is each trace?
Modelled climatemodelled
How to read this: each dot is one detection of this species' DNA in an environmental sample. The confidence meter weighs how many independent studies and places back up the signal — one detection in one study is a hint; many across several studies is solid. Records dated before 2008 (when eDNA methods began) are treated as likely mislabeled and left off the map.