Calocedrus decurrens
(Torr.) Florin · speciesAt a glance
Sources14 archives
Databases and archives Calocedrus decurrens's data was compiled from.
WikipediaWikimedia Foundation12 languages↗
BioWikiNetmultilingual Wikipediamultilingual↗
GBIFGlobal Biodiversity Information Facility10 845 records↗
ENAEuropean Nucleotide Archive · EMBL-EBI10 eDNA detections↗
BOLD SystemsCentre for Biodiversity Genomics11 specimens↗
NCBIUS National Library of Medicinesequences↗
LOTUSNatural Products (Wikidata)compounds↗
NPASSNat. Product Activity & Species Sourcecompounds↗
GRIN TaxonomyUSDA-ARSdistribution & uses↗
Open Tree of LifeOpenTreephylogeny backbone↗
CCDBChromosome Counts DB · Tel Aviv U.genome & karyotype↗
PloiDBPloidy Databasegenome & karyotype
WikidataWikimedia Foundationstructured facts↗
GLoBIGlobal Biotic Interactionsbiotic interactions↗Every layer below draws on the sources above — open one to explore it, or use ← → to move between tabs.
Calocedrus decurrens, with the common names incense cedar and California incense-cedar (syn. Libocedrus decurrens Torr.), is a species of coniferous tree native to western North America. It is the most widely known species in the genus, and is often simply called 'incense cedar' without the regional qualifier.Farjon, A. (2005). Monograph of Cupressaceae and Sciadopitys. Royal Botanic Gardens, Kew.
No narrative description available for this taxon yet.
Size & morphology4
Life cycle & reproduction27
Diet & foraging1
Habitat & environment25
Physiology & chemistry20
Uses & economy16
Other traits7
Compounds documented for Calocedrus decurrens across natural-product and food-composition databases — not just the ~150 nutrients on a classic label ("nutritional dark matter").
Compound class profile5 classes
Documented compounds156 total
| Compound | Class | Amount | Source |
|---|---|---|---|
| (+)-S-Allylcysteine | present | NPASS | |
| (1S,4aR,5S,8aS)-5-[(E)-5-hydroxy-3-methylpent-3-enyl]-1,4a-dimethyl-6-methylidene-3,4,5,7,8,8a-hexahydro-2H-naphthalene-1-carbaldehyde | present | LOTUS | |
| (2I+/-,3I(2),5I+/-,6I(2),25R)-2,6-Dihydroxyspirostan-3-yl O-I(2)-D-glucopyranosyl-(1a3)-O-I(2)-D-glucopyranosyl-(1a4)-I(2)-D-galactopyranoside | present | NPASS | |
| (2R)-2-amino-3-[(R)-prop-2-enylsulfinyl]propanoic acid | present | NPASS | |
| (2R)-2-azaniumyl-3-[(S)-methylsulfinyl]propanoate | present | NPASS | |
| (2R)-2-hydroxy-N-[(2S,3R,4E,8E)-3-hydroxy-1-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoctadeca-4,8-dien-2-yl]pentadecanamide | present | NPASS | |
| (2R)-2-hydroxy-N-[(2S,3R,4E,8E)-3-hydroxy-1-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoctadeca-4,8-dien-2-yl]tetradecanamide | present | NPASS | |
| (2R)-2-hydroxy-N-[(E,2S,3R)-3-hydroxy-1-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoctadec-4-en-2-yl]hexadecanamide | present | NPASS | |
| (2R,3R,4S,5S,6R)-2-[(2R)-4-[(1R,2S,4R,6R,7S,8R,9S,12S,13S,16S,18S)-16-[(2R,3R,4R,5R,6R)-3,4-dihydroxy-5-[(2S,3R,4S,5R,6R)-5-hydroxy-6-(hydroxymethyl)-3-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-4-[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxyoxan-2-yl]oxy-6-(hydroxymethyl)oxan-2-yl]oxy-6-hydroxy-7,9,13-trimethyl-5-oxapentacyclo[10.8.0.02,9.04,8.013,18]icosan-6-yl]-2-methylbutoxy]-6-(hydroxymethyl)oxane-3,4,5-triol | present | NPASS | |
| (2R,3R,4S,5S,6R)-2-[(2R)-4-[(1R,2S,4R,6R,7S,8R,9S,12S,13S,16S,18S)-16-[(2R,3R,4R,5R,6R)-5-[(2S,3R,4S,5R,6R)-3-[(2S,3R,4S,5R,6R)-3,5-dihydroxy-6-(hydroxymethyl)-4-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-2-yl]oxy-5-hydroxy-6-(hydroxymethyl)-4-[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-6-hydroxy-7,9,13-trimethyl-5-oxapentacyclo[10.8.0.02,9.04,8.013,18]icosan-6-yl]-2-methylbutoxy]-6-(hydroxymethyl)oxane-3,4,5-triol | present | NPASS |
A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Calocedrus decurrens has left across the world's sequence archives.
At a glance
★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.
The complete instruction manual Calocedrus decurrens carries — its genome. We read it from three angles — how big it is, how the DNA is packed into chromosomes, and how completely it has been sequenced — and explain how to read each value as you go.
Genome sizehow big the whole instruction manual is
Measured in base pairs (bp) — the individual letters of DNA (human ≈ 3.2 Gb, a bacterium a few million). The chart places this genome on a logarithmic scale — each step to the right is ten times bigger — among reference organisms. Across species a bigger genome loosely tracks with larger cells, slower growth and lower-energy lifestyles (powered flight favours small genomes) — yet it does not imply more genes or a more advanced organism (the long-standing C-value paradox).
Chromosomes & ploidyhow the DNA is packaged
2n is the full chromosome count in a normal body cell; n is a gamete (egg or sperm), which carries half. Ploidy is how many complete chromosome sets each cell holds — 2× (diploid) is typical for animals, while higher levels (polyploidy) are common in plants. Click any value below to see the underlying records and sources.
2n 225×CCDB · ipcn-api-dl · CCDB · book-ipcn67-71 · CCDB · book-ipcn75-78 +1
diploid inferred1×PloiDB · family-scale
How far back this lineage goes — and how we know. Everything here is measured in Ma, short for “mega-annum”: millions of years ago. The chart reads left to right like a calendar of the Earth, from the deep past on the left to today at the right edgetop to bottom like a core drilled through the Earth, from the deep past at the top down to today at the bottom.
At a glance
When this lineage existed
How to read this: the coloured strip along the bottomdown the left is the geological calendar — the standard epochs (Pliocene, Pleistocene…) every museum uses, shown so you can see which chapter of Earth's history this lineage lived in. This lineage is a young one, so the strip is zoomed in to epochs — the finer subdivisions inside a period. The orange marker is the DNA clock: DNA accumulates mutations at a roughly steady rate, so comparing this species' DNA with its relatives estimates when the lineage split off — independently of any fossil.
Record type10 845 records
Origin
Range
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Museum / Voucheredphysical evidence
Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Holding institutions91 of 131 geolocated
Institutions and collections holding physical, vouchered specimens of this species — click a row to fly to it on the map.
| Institution | Specimens |
|---|---|
| Angwin, US | 337 |
| Claremont, US | 135 |
| Arcata, US | 114 |
| Calabar, NG | 111 |
| San Diego, US | 83 |
| Corvallis, US | 75 |
| University of Arizona, Laboratory of Tree-Ring Researchlocation not on record | 72 |
| Riverside, US | 71 |
| CASlocation not on record | 62 |
| DOI/NPS, Little Rock Central High School National Historic Sitelocation not on record | 55 |
| Davis, US | 48 |
| Santa Barbara, US | 47 |
| US | 36 |
| Bronx, US | 34 |
| Madrid, ES | 33 |
| San Luis Obispo, US | 30 |
| Tempe, US | 24 |
| BAYLUlocation not on record | 22 |
| ASUlocation not on record | 21 |
| Los Angeles, US | 16 |
| Turlock, US | 15 |
| Severin-McDaniel Insect Collectionlocation not on record | 15 |
| Canadian Department of Agriculturelocation not on record | 14 |
| LDlocation not on record | 14 |
| Kew, GB | 14 |
| Phoenix, US | 13 |
| Denver, US | 13 |
| Ensenada, MX | 13 |
| Mexico City, MX | 12 |
| Auckland, NZ | 12 |
| Irvine, US | 12 |
| Long Beach, US | 11 |
| Pullman, US | 11 |
| Rotorua, NZ | 10 |
| Logan, US | 10 |
| Vitoria, ES | 9 |
| BIO-UNIPIlocation not on record | 9 |
| Wuzhou, CN | 8 |
| San Francisco, US | 8 |
| MeiseBGlocation not on record | 7 |
| Ashland, US | 7 |
| Northridge, US | 7 |
| San Bernardino, US | 7 |
| Chongqing Museumlocation not on record | 6 |
| Barcelona, ES | 6 |
| Fort Worth, US | 6 |
| Dekalb, US | 6 |
| Tacoma, US | 5 |
| WTUlocation not on record | 5 |
| University of Stellenboschlocation not on record | 4 |
| Badajoz, ES | 4 |
| College of the Atlantic, Museumlocation not on record | 4 |
| MAlocation not on record | 4 |
| Saint Louis, US | 4 |
| Catalina Island Conservancylocation not on record | 4 |
| Columbia, US | 3 |
| San Francisco, US | 3 |
| DOI/NPS, Greenbelt Parklocation not on record | 3 |
| Fullerton, US | 3 |
| Flagstaff, US | 3 |
| Bloomington, US | 3 |
| Boise, US | 3 |
| Provo, US | 3 |
| San Jose, US | 3 |
| Tampa, US | 3 |
| KNFHClocation not on record | 3 |
| Austin, US | 3 |
| Edinburgh, GB | 3 |
| Entomological Society of Latvialocation not on record | 3 |
| Santiago de Compostela, ES | 2 |
| AUAlocation not on record | 2 |
| Moscow, US | 2 |
| Mississippi State, US | 2 |
| Stockholm, SE | 2 |
| Chapingo, MX | 2 |
| Bangkok, TH | 2 |
| Santa Cruz, US | 2 |
| Durham, US | 2 |
| EL PASO, US | 2 |
| Western Carolina Universitylocation not on record | 2 |
| Pamplona, ES | 2 |
| University of Silesia in Katowicelocation not on record | 2 |
| Tilburg, NL | 2 |
| Minia, EG | 2 |
| Karlsruhe, DE | 2 |
| Christchurch, NZ | 2 |
| Philadelphia, US | 1 |
| Berlin, DE | 1 |
| Montréal, CA | 1 |
| Chadron, US | 1 |
| Uniwersytet Śląski w Katowicachlocation not on record | 1 |
| Arizona State University Biocollectionslocation not on record | 1 |
| The University of Arizonalocation not on record | 1 |
| Guilin, CN | 1 |
| Millersville, US | 1 |
| Granada, ES | 1 |
| KNFSClocation not on record | 1 |
| Henderson, US | 1 |
| Sede di Via Giorgio La Pira del Museo di Storia naturale di Firenze | Via Giorgio La Pira headquarter of the Natural History Museum in Florencelocation not on record | 1 |
| HJAEFlocation not on record | 1 |
| Tartu, EE | 1 |
| Salamanca, ES | 1 |
| Guangzhou, CN | 1 |
| Ann Arbor, US | 1 |
| Valdosta State Universitylocation not on record | 1 |
| CICYTEXlocation not on record | 1 |
| Guasave, MX | 1 |
| València, ES | 1 |
| La Paz, MX | 1 |
| Pomona Collegelocation not on record | 1 |
| GAlocation not on record | 1 |
| Cheney, US | 1 |
| Portland, US | 1 |
| Oskarshamn, SE | 1 |
| Dresden, DE | 1 |
| Texas A&M Universitylocation not on record | 1 |
| University of Alberta Museumslocation not on record | 1 |
| Brookings, US | 1 |
| Bend, US | 1 |
| St. Paul, US | 1 |
| Clemson, US | 1 |
| GZUlocation not on record | 1 |
| Institut und Museum fuer Geologie und Palaeontologielocation not on record | 1 |
| Chicago, US | 1 |
| Durban, ZA | 1 |
| Truckee, US | 1 |
| Edmonton, CA | 1 |
| BDBClocation not on record | 1 |
| Florida Museum of Natural History- Zoology, Paleontology & Paleobotanylocation not on record | 1 |
| Adam Mickiewicz University in Poznańlocation not on record | 1 |
| San Diego Natural History Museum, Herbariumlocation not on record | 1 |
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
Where the DNA of Calocedrus decurrens was picked up in samples of water, soil or air — nobody saw the organism, only its DNA left behind. A trace is a clue that the species was near, not a confirmed sighting.
Signal
Where its DNA was found
How strong is each trace?
Modelled climatemodelled
How to read this: each dot is one detection of this species' DNA in an environmental sample. The confidence meter weighs how many independent studies and places back up the signal — one detection in one study is a hint; many across several studies is solid. Records dated before 2008 (when eDNA methods began) are treated as likely mislabeled and left off the map.