Berberis vulgaris
speciesAt a glance
Sources14 archives
Databases and archives Berberis vulgaris's data was compiled from.
BioWikiNetmultilingual Wikipediamultilingual↗
GBIFGlobal Biodiversity Information Facility131 523 records↗
ENAEuropean Nucleotide Archive · EMBL-EBI14 eDNA detections↗
BOLD SystemsCentre for Biodiversity Genomics24 specimens↗
NCBIUS National Library of Medicinesequences↗
LOTUSNatural Products (Wikidata)compounds↗
NPASSNat. Product Activity & Species Sourcecompounds↗
GRIN TaxonomyUSDA-ARSdistribution & uses↗
Open Tree of LifeOpenTreephylogeny backbone↗
CCDBChromosome Counts DB · Tel Aviv U.genome & karyotype↗
GoaTGenomes on a Tree · Sangergenome & karyotype↗
PloiDBPloidy Databasegenome & karyotype
Paleobiology DatabasePBDB consortiumfossil record↗
GLoBIGlobal Biotic Interactionsbiotic interactions↗Every layer below draws on the sources above — open one to explore it, or use ← → to move between tabs.
L’épine-vinette commune ou le vinettier est une espèce de plantes à fleurs de la famille des berbéridacées. C'est un arbuste originaire de l'Ancien Monde et introduite ailleurs comme plante ornementale. En France, à partir du XIXe siècle, l'épine-vinette a été fréquemment éradiquée car c'est un hôte intermédiaire dans le cycle de la rouille noire du blé, un champignon pathogène des céréales. Cependant elle reste présente dans les zones de coteaux calcaires d'une grande moitié nord de la France.
No narrative description available for this taxon yet.
Size & morphology19
Life cycle & reproduction13
Diet & foraging2
Habitat & environment12
Physiology & chemistry9
Other traits1
Compounds documented for Berberis vulgaris across natural-product and food-composition databases — not just the ~150 nutrients on a classic label ("nutritional dark matter").
Compound class profile5 classes
Documented compounds92 total
| Compound | Class | Amount | Source |
|---|---|---|---|
| (+)-Berbamine | present | LOTUS | |
| (+)-Lyoniresinol | present | LOTUS | |
| (+)-Magnoflorine | present | LOTUS | |
| (-)-Galantamine | present | NPASS | |
| (14S)-16,17-dimethoxy-14-(trichloromethyl)-5,7-dioxa-13-azapentacyclo[11.8.0.02,10.04,8.015,20]henicosa-1(21),2,4(8),9,15(20),16,18-heptaene | present | LOTUS | |
| (14S)-16,17-dimethoxy-5,7-dioxa-13-azapentacyclo[11.8.0.02,10.04,8.015,20]henicosa-1(21),2,4(8),9,15(20),16,18-heptaen-14-ol | present | LOTUS | |
| (1S)-1,2,3,4-Tetrahydro-1-((4-(2-hydroxy-5-(((1R)-1,2,3,4-tetrahydro-7-hydroxy-6-methoxy-2-methyl-1-isoquinolinyl)methyl)phenoxy)phenyl)methyl)-6-methoxy-2-methyl-7-isoquinolinol | present | LOTUS | |
| (1S,14R)-20,21,25-trimethoxy-15,30-dimethyl-8,23-dioxa-15,30-diazaheptacyclo[22.6.2.29,12.13,7.114,18.027,31.022,33]hexatriaconta-3(36),4,6,9(35),10,12(34),18,20,22(33),24,26,31-dodecaen-6-ol | present | NPASS | |
| (1S,14S)-20,21,25-trimethoxy-15,30-dimethyl-8,23-dioxa-15,30-diazaheptacyclo[22.6.2.29,12.13,7.114,18.027,31.022,33]hexatriaconta-3(36),4,6,9(35),10,12(34),18,20,22(33),24,26,31-dodecaen-6-ol | present | NPASS | |
| (1S,15R)-10,21,22,26-tetramethoxy-16,31-dimethyl-8,24-dioxa-16,31-diazaheptacyclo[23.6.2.13,7.19,13.115,19.028,32.023,34]hexatriaconta-3(36),4,6,9,11,13(35),19,21,23(34),25,27,32-dodecaene | present | LOTUS |
A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Berberis vulgaris has left across the world's sequence archives.
At a glance
★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.
The complete instruction manual Berberis vulgaris carries — its genome. We read it from three angles — how big it is, how the DNA is packed into chromosomes, and how completely it has been sequenced — and explain how to read each value as you go.
Genome sizehow big the whole instruction manual is
Measured in base pairs (bp) — the individual letters of DNA (human ≈ 3.2 Gb, a bacterium a few million). The chart places this genome on a logarithmic scale — each step to the right is ten times bigger — among reference organisms. Across species a bigger genome loosely tracks with larger cells, slower growth and lower-energy lifestyles (powered flight favours small genomes) — yet it does not imply more genes or a more advanced organism (the long-standing C-value paradox).
Chromosomes & ploidyhow the DNA is packaged
2n is the full chromosome count in a normal body cell; n is a gamete (egg or sperm), which carries half. Ploidy is how many complete chromosome sets each cell holds — 2× (diploid) is typical for animals, while higher levels (polyploidy) are common in plants. Click any value below to see the underlying records and sources.
2n 2830×GoaT · Kew Plant DNA C-values Database · CCDB · slov-fl · CCDB · iber-fl +10
2n 561×CCDB · kew
n 1413×CCDB · iber-fl · CCDB · ipcn-api-dl · CCDB · CromoCat 2015
diploid1×GoaT · Kew Plant DNA C-values Database
diploid inferred1×PloiDB · genus-scale
Sequencing statusassembly quality — how far to trust these numbers
Assembly level tells you how finished the sequence is — from fragmented contigs, through scaffolds, up to a full chromosome-level assembly. BUSCO % estimates completeness: the share of genes expected to be present that were actually found. These describe the data quality, not the organism.
Record type131 523 records
Origin
Range
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Museum / Voucheredphysical evidence
Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Holding institutions128 of 226 geolocated
Institutions and collections holding physical, vouchered specimens of this species — click a row to fly to it on the map.
| Institution | Specimens |
|---|---|
| Uniwersytet Wrocławskilocation not on record | 1 225 |
| LDlocation not on record | 274 |
| Olocation not on record | 272 |
| Salzburg, AT | 237 |
| Moscow State Universitylocation not on record | 177 |
| MeiseBGlocation not on record | 132 |
| SLU Artdatabankenlocation not on record | 132 |
| Helsinki, FI | 95 |
| Tartu, EE | 88 |
| Karlsruhe, DE | 87 |
| KMNlocation not on record | 87 |
| Trondheim, NO | 86 |
| Oskarshamn, SE | 84 |
| Mlocation not on record | 69 |
| University of New Hampshirelocation not on record | 67 |
| Görlitz, DE | 62 |
| Adam Mickiewicz University in Poznańlocation not on record | 61 |
| Bergen, NO | 61 |
| Kuopio, FI | 60 |
| Chongqing Museumlocation not on record | 57 |
| BIO-UNIPIlocation not on record | 55 |
| Burlington, US | 40 |
| BFLlocation not on record | 39 |
| Uppsala, SE | 38 |
| Philadelphia, US | 38 |
| New Haven, US | 36 |
| Vitoria, ES | 36 |
| MAlocation not on record | 33 |
| Zürich, CH | 32 |
| Turku, FI | 31 |
| GBS RAN - Glavny Botanichesky Sad Rossijskoj Akademii Nauklocation not on record | 26 |
| Xining, CN | 23 |
| Tallinn, EE | 23 |
| Jyväskylä, FI | 23 |
| Provincia di Livornolocation not on record | 23 |
| Museo Entomologico de Leonlocation not on record | 23 |
| Bern, CH | 22 |
| Philadelphia, US | 22 |
| Museum Ludovicae Ulricae, Zoology Institute of the University of Uppsalalocation not on record | 22 |
| Ann Arbor, US | 21 |
| Oulu, FI | 20 |
| Zürich, CH | 20 |
| Wlocation not on record | 20 |
| Uniwersytet Warszawskilocation not on record | 20 |
| Madison, US | 18 |
| DBF-NHMDlocation not on record | 18 |
| BClocation not on record | 17 |
| Tampere, FI | 17 |
| South Kensington, GB | 17 |
| Uniwersytet Jagiellońskilocation not on record | 17 |
| Québec, CA | 17 |
| BRNUlocation not on record | 17 |
| Toronto, CA | 15 |
| University of Stellenboschlocation not on record | 14 |
| SWlocation not on record | 13 |
| Auckland, NZ | 13 |
| Saint Louis, US | 13 |
| GJOlocation not on record | 13 |
| Denver, US | 13 |
| Vancouver, CA | 12 |
| College Park, US | 12 |
| Staten Island, US | 12 |
| Acadia Universitylocation not on record | 12 |
| Moscow, US | 10 |
| Bloomington, US | 10 |
| Bronx, US | 10 |
| TROMlocation not on record | 9 |
| Porvoo, FI | 9 |
| Berlin, DE | 9 |
| San Sebastián, ES | 9 |
| Missoula, US | 9 |
| Wellington, NZ | 9 |
| Christchurch, NZ | 9 |
| Paris, FR | 9 |
| Philadelphia, US | 8 |
| St. Paul, US | 8 |
| Montréal, CA | 7 |
| Natural History Museum Rotterdamlocation not on record | 7 |
| Hudson, US | 7 |
| Edinburgh, GB | 7 |
| Kingston, US | 7 |
| Institut und Museum fuer Geologie und Palaeontologielocation not on record | 7 |
| Barcelona, ES | 7 |
| Hobart, AU | 7 |
| Pullman, US | 7 |
| Guangzhou, CN | 7 |
| Tula State Universitylocation not on record | 7 |
| San Jose State University, Museum of Birds and Mammalslocation not on record | 7 |
| Porrentruy, CH | 6 |
| Frauenfeld, CH | 6 |
| Frankfurt am Main | 6 |
| Conservatoire botanique national du Bassin parisienlocation not on record | 6 |
| Museo civico La Terra e l'Uomo di Crocetta del Montellolocation not on record | 6 |
| Museo civico di Storia naturale Giacomo Doria di Genova | Giacomo Doria Natural History Museum in Genoalocation not on record | 5 |
| NMBU:MINAlocation not on record | 5 |
| Beijing, CN | 5 |
| Chengdu, CN | 5 |
| Keene State Universitylocation not on record | 5 |
| València, ES | 5 |
| MHNAIXlocation not on record | 5 |
| Stockholm, SE | 5 |
| Entomological Society of Latvialocation not on record | 5 |
| Allentown, US | 5 |
| College of the Atlantic, Museumlocation not on record | 5 |
| LfUlocation not on record | 4 |
| PRClocation not on record | 4 |
| UGentlocation not on record | 4 |
| Fredericksburg, US | 4 |
| Madrid, ES | 4 |
| Glarus, CH | 4 |
| Canberra, AU | 4 |
| Mount Annan, AU | 4 |
| University of Guelph, OAC Herbariumlocation not on record | 4 |
| Bourges, FR | 4 |
| DOI/NPS, Colonial National Historical Parklocation not on record | 4 |
| University of Alberta Museumslocation not on record | 4 |
| Salamanca, ES | 3 |
| Tula State Lev Tolstoy Pedagogical Universitylocation not on record | 3 |
| Cheney, US | 3 |
| Boise, US | 3 |
| Sion, CH | 3 |
| Mohonk Preservelocation not on record | 3 |
| US | 3 |
| SZUlocation not on record | 3 |
| Wuzhou, CN | 3 |
| Albuquerque, US | 3 |
| Durham, US | 3 |
| Kew, GB | 3 |
| Royal Botanical Gardenslocation not on record | 3 |
| Tilburg, NL | 3 |
| Tampa, US | 3 |
| Uniwersytet w Białymstokulocation not on record | 3 |
| WINlocation not on record | 3 |
| Université Lavallocation not on record | 3 |
| Davenport, US | 3 |
| Fulda, DE | 3 |
| Monastir, TN | 2 |
| CICYTEXlocation not on record | 2 |
| Balochistan University of Information Technology, Engineering and Management Scienceslocation not on record | 2 |
| IDElocation not on record | 2 |
| Pocatello, US | 2 |
| Uniwersytet Śląski w Katowicachlocation not on record | 2 |
| UoB-IBlocation not on record | 2 |
| Göteborg, SE | 2 |
| New Brunswick, US | 2 |
| Hamilton, US | 2 |
| Namur, BE | 2 |
| Dresden, DE | 2 |
| Cambridge, US | 2 |
| Instytut Ochrony Przyrody Polskiej Akademii Nauklocation not on record | 2 |
| Mexico City, MX | 2 |
| Ernst-Moritz-Arndt-Universitat Greifswaldlocation not on record | 2 |
| Oswego, US | 2 |
| Canadian Department of Agriculturelocation not on record | 2 |
| GZUlocation not on record | 2 |
| Staatliches Museum fuer Naturkunde Karlsruhe (State Museum of Natural History)location not on record | 2 |
| Chinese Academy of Forestrylocation not on record | 2 |
| Cincinnati, US | 2 |
| Logan, US | 2 |
| München, DE | 2 |
| AZE015location not on record | 2 |
| Smithfield, AU | 1 |
| Chengdu, CN | 1 |
| McWane Science Centerlocation not on record | 1 |
| Dover, US | 1 |
| Riverside, US | 1 |
| Corvallis, US | 1 |
| Saint John, CA | 1 |
| Dekalb, US | 1 |
| ASUlocation not on record | 1 |
| Spearfish, US | 1 |
| Badajoz, ES | 1 |
| Musée des Confluenceslocation not on record | 1 |
| Salvador, BR | 1 |
| Pretoria, ZA | 1 |
| Davis, US | 1 |
| WTUlocation not on record | 1 |
| Macomb, US | 1 |
| Istituto Agrario Castelnuovolocation not on record | 1 |
| Chengdu, CN | 1 |
| Siouxland Heritage Museumlocation not on record | 1 |
| The State Museum-Preserve "The Kulikovo pole"location not on record | 1 |
| TUR-Alocation not on record | 1 |
| CJBGlocation not on record | 1 |
| University of British Columbia, Herbariumlocation not on record | 1 |
| Pamplona, ES | 1 |
| BDBClocation not on record | 1 |
| Brookings, US | 1 |
| Royal Botanic Garden Edinburghlocation not on record | 1 |
| Uniwersytet Rolniczy im. Hugona Kołłątaja w Krakowielocation not on record | 1 |
| Nanjing, CN | 1 |
| Rotorua, NZ | 1 |
| BSBIlocation not on record | 1 |
| Herb. BBGlocation not on record | 1 |
| Fayetteville, US | 1 |
| Uniwersytet Opolskilocation not on record | 1 |
| Bangkok, TH | 1 |
| Nijmegen, NL | 1 |
| Boumlocation not on record | 1 |
| FLADlocation not on record | 1 |
| Taipei, TW | 1 |
| Chicago, US | 1 |
| Winterthur, CH | 1 |
| Victoria, CA | 1 |
| Naturalis Biodiversity Centerlocation not on record | 1 |
| Brock University (BU)location not on record | 1 |
| The Tula Region State Institution of Culture "Tula Museum Association"location not on record | 1 |
| Musee des Dinosaures d'Esperaza (Aude)location not on record | 1 |
| Mississippi State, US | 1 |
| Yangling, CN | 1 |
| Port Elizabeth Museum (Bayworld)location not on record | 1 |
| Museu Nacional, Universidade Federal do Rio de Janeirolocation not on record | 1 |
| San Jose, US | 1 |
| Gijón, ES | 1 |
| Alicante, ES | 1 |
| Chadron, US | 1 |
| Musee National d'histoire Naturelle Luxembourglocation not on record | 1 |
| ROM020location not on record | 1 |
| CBDClocation not on record | 1 |
| H-Schuhwlocation not on record | 1 |
| nbflocation not on record | 1 |
| PrivatHerblocation not on record | 1 |
| Xiamen, CN | 1 |
| Millersville, US | 1 |
| Universidad del Pais Vasco (UPV/EHU)location not on record | 1 |
| Museo Achille Folettolocation not on record | 1 |
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
Where the DNA of Berberis vulgaris was picked up in samples of water, soil or air — nobody saw the organism, only its DNA left behind. A trace is a clue that the species was near, not a confirmed sighting.
Signal
Where its DNA was found
How strong is each trace?
Modelled climatemodelled
How to read this: each dot is one detection of this species' DNA in an environmental sample. The confidence meter weighs how many independent studies and places back up the signal — one detection in one study is a hint; many across several studies is solid. Records dated before 2008 (when eDNA methods began) are treated as likely mislabeled and left off the map.