Bacidia rubella is a species of lichen in the family Ramalinaceae. It is a host species of the lichenicolous fungus species Muellerella hospitans and Zwackhiomyces polischukii.
No narrative description available for this taxon yet.
Compounds documented for Bacidia rubella across natural-product and food-composition databases — not just the ~150 nutrients on a classic label ("nutritional dark matter").
Compound class profile1 class
Depsides1
Documented compounds1 total
Compound
Class
Amount
Source
Atranorin
present
LOTUS
05DNA & barcoding5 specimens
A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Bacidia rubella has left across the world's sequence archives.
At a glance
DNA specimens5
Marker genes2
GenBank sequences10
eDNA detections8
Countries4
The DNA barcodea real sequence read deposited for this species
Bacidia rubella voucher M-0308495 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence
Marker genes sequenced
★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.
★ITS10★ITS1
fungal barcode
06Genome at a glanceGoaT · NCBI
The complete instruction manualBacidia rubella carries — its genome. We read it from three angles — how big it is, how the DNA is packed into chromosomes, and how completely it has been sequenced — and explain how to read each value as you go.
Genome sizehow big the whole instruction manual is
Genome size≈33 524 925 bp assembly estimate
Measured in base pairs (bp) — the individual letters of DNA (human ≈ 3.2 Gb, a bacterium a few million). The chart places this genome on a logarithmic scale — each step to the right is ten times bigger — among reference organisms. Across species a bigger genome loosely tracks with larger cells, slower growth and lower-energy lifestyles (powered flight favours small genomes) — yet it does not imply more genes or a more advanced organism (the long-standing C-value paradox).
BACTERIUM Carsonella ruddii0.00016 Gb
THIS GENOME Bacidia rubella0.03 Gb
FUNGUS0.04 Gb
INSECT0.25 Gb
HUMAN3.2 Gb
WHEAT17 Gb
FERN Tmesipteris160.45 Gb
Sequencing statusassembly quality — how far to trust these numbers
Assembly level tells you how finished the sequence is — from fragmented contigs, through scaffolds, up to a full chromosome-level assembly. BUSCO % estimates completeness: the share of genes expected to be present that were actually found. These describe the data quality, not the organism.
Assembly levelScaffold
08Occurrence & distribution
Record type19 207 records
Wild obs. + sensor16 826
Museum / vouchered2 363
Cultivated / captive3
Other15
Origin
Native3
Range
Area of Occupancy AOO33 976 km²
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Coordinate accuracy88% within 1 km
≤100 m 11 772≤1 km 2 515≤10 km 1 841>10 km 18
16 146 georeferenced · 680 without coordinates
Open the mapobservation + sensor16 826
Museum / Voucheredphysical evidence
Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.
Coordinate accuracy51% within 1 km
≤100 m 299≤1 km 275≤10 km 463>10 km 95
1 132 georeferenced · 1 231 without coordinates
Open the institutions mapphysical evidence2 363
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
Coordinate accuracy
no georeferenced coordinates · 3 records without
Open the mapnot free-living3
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
10Collections & institutions
Holding institutions44 of 98 geolocated
Institutions and collections holding physical, vouchered specimens of this species — click a row to fly to it on the map.
Institution
Specimens
Uppsala, SE
189
Olocation not on record
156
Philadelphia, US
151
LDlocation not on record
134
Senckenberg Gesellschaft für Naturforschung: Senckenberg Forschungsinstitut und Naturmuseumlocation not on record
121
GZUlocation not on record
118
University of Gdansklocation not on record
93
Madison, US
82
SLU Artdatabankenlocation not on record
70
St. Paul, US
70
TSBlocation not on record
58
Bergen, NO
49
Chicago, US
40
ULBF-AGRlocation not on record
34
Berlin, DE
34
Trondheim, NO
33
CJBGlocation not on record
32
Bronx, US
32
Adam Mickiewicz University in Poznańlocation not on record
29
Durham, US
27
Museo civico La Terra e l'Uomo di Crocetta del Montellolocation not on record
27
Helsinki, FI
27
CLUlocation not on record
26
DOI/NPS, Colonial National Historical Parklocation not on record
26
MAlocation not on record
25
Stockholm, SE
25
BioFokuslocation not on record
20
ASUlocation not on record
16
San Sebastián, ES
16
Madrid, ES
16
BDBClocation not on record
15
Metsähallituslocation not on record
15
Wuzhou, CN
15
Uniwersytet Wrocławskilocation not on record
13
Vitoria, ES
13
Yerevan, AM
13
US
12
Barcelona, ES
12
MeiseBGlocation not on record
11
Vancouver, CA
10
Minia, EG
9
Göteborg, SE
9
PHlocation not on record
8
Ann Arbor, US
8
Tallinn, EE
8
NMBU:MINAlocation not on record
7
BClocation not on record
7
Champaign, US
6
Oskarshamn, SE
6
Polar-Alpine Botanical Garden-Institutelocation not on record
6
Burlington, US
6
New Haven, US
6
South Kensington, GB
5
Repubblica di San Marinolocation not on record
4
Clocation not on record
4
MNHWlocation not on record
4
Staatsarchiv Urilocation not on record
4
M-Lichenslocation not on record
4
Frauenfeld, CH
4
UoB-IBlocation not on record
3
Bozeman, US
3
Museo di Storia Naturale di Venezia Giancarlo Ligabue | Natural History Museum of Venice Giancarlo Ligabuelocation not on record
3
NYSlocation not on record
3
TROMlocation not on record
3
BG-NMNHSlocation not on record
3
València, ES
3
University of Stellenboschlocation not on record
3
McWane Science Centerlocation not on record
3
Oregon State Universitylocation not on record
3
Pretoria, ZA
2
Entomological Society of Latvialocation not on record
2
Museum of the Rockieslocation not on record
2
Mlocation not on record
2
Bourges, FR
2
Kuopio, FI
2
Museo Achille Folettolocation not on record
1
Salzburg, AT
1
Museum Ludovicae Ulricae, Zoology Institute of the University of Uppsalalocation not on record
1
Swiss Federal Research Institute WSLlocation not on record
1
nbflocation not on record
1
Santa Barbara, US
1
Museo civico di Storia naturale Giacomo Doria di Genova | Giacomo Doria Natural History Museum in Genoalocation not on record
1
Sede di Via Giorgio La Pira del Museo di Storia naturale di Firenze | Via Giorgio La Pira headquarter of the Natural History Museum in Florencelocation not on record
1
Royal Ontario Museumlocation not on record
1
Edinburgh, GB
1
ILLSlocation not on record
1
Kew, GB
1
Clemson, US
1
Chapel Hill, US
1
CJBNlocation not on record
1
Chicago, US
1
Kathmandu, NP
1
Uniwersytet Marii Curie-Skłodowskiejlocation not on record
1
Wlocation not on record
1
UNITOlocation not on record
1
Boise, US
1
GJOlocation not on record
1
WU-MYClocation not on record
1
98 institutions · 2 085 of 2 363 vouchered records shown · 277 without an institution code
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
09Environmental DNA8 detections
Where the DNA of Bacidia rubella was picked up in samples of water, soil or air — nobody saw the organism, only its DNA left behind. A trace is a clue that the species was near, not a confirmed sighting.
Signal
Detections DNA found8
Studies independent surveys2
Countries3
Signal confidence: moderateweighed across independent studies, places & mapped detections
Where its DNA was found
0 of 8 detections have coordinates
Open the map3 countries0
Fraxinus excelsior
How strong is each trace?
DNA read depthRead counts were not reported for this species — the map shows presence only, not how strong each trace was.
Modelled climatemodelled
−15°Ctemperature across detection sites+40°C
Temperature median10.9 °C 1.20–12.0
Seasonal swing summer↔winter22.3 °C
Max temp (day)14.2 °C 5.00–15.1
Min temp (night)5.60 °C -3.40–9.80
Precipitation60.8 mm/mo 46.7–65.7
Air humidity62.7 % 58.3–64.6
Moisture balance17.8 mm/mo -36.6–24.0
Vapour deficit453 Pa 284–557
Wind speed3.30 m/s 2.00–4.30
Cloud cover47.6 % 40.0–51.9
CHELSA 1981–2010, ~9 km grid, at location & month of 5 detection points · median with p10–p90 · reflects where sampling happened, not only the true niche
How to read this: each dot is one detection of this species' DNA in an environmental sample. The confidence meter weighs how many independent studies and places back up the signal — one detection in one study is a hint; many across several studies is solid. Records dated before 2008 (when eDNA methods began) are treated as likely mislabeled and left off the map.
WikipediaWikimedia Foundation2 languages↗
BioWikiNetmultilingual Wikipediamultilingual↗
GBIFGlobal Biodiversity Information Facility19 207 records↗
ENAEuropean Nucleotide Archive · EMBL-EBI8 eDNA detections↗
BOLD SystemsCentre for Biodiversity Genomics5 specimens↗
NCBIUS National Library of Medicinesequences↗
LOTUSNatural Products (Wikidata)compounds↗
Open Tree of LifeOpenTreephylogeny backbone↗
GoaTGenomes on a Tree · Sangergenome & karyotype↗
GLoBIGlobal Biotic Interactionsbiotic interactions↗