Apodemus sylvaticus
(Linnaeus, 1758) · speciesAt a glance
Sources13 archives
Databases and archives Apodemus sylvaticus's data was compiled from.
WikipediaWikimedia Foundation15 languages↗
Animal Diversity WebUniv. of Michigan MZspecies account↗
BioWikiNetmultilingual Wikipediamultilingual↗
GBIFGlobal Biodiversity Information Facility171 735 records↗
ENAEuropean Nucleotide Archive · EMBL-EBI64 eDNA detections↗
BOLD SystemsCentre for Biodiversity Genomics88 specimens↗
Open Tree of LifeOpenTreephylogeny backbone↗
GoaTGenomes on a Tree · Sangergenome & karyotype↗
NCBIUS National Library of Medicinegenome & karyotype↗
Tree of SexTree of Sex Consortiumgenome & karyotype↗
Paleobiology DatabasePBDB consortiumfossil record↗
WikidataWikimedia Foundationstructured facts↗
GLoBIGlobal Biotic Interactionsbiotic interactions↗Every layer below draws on the sources above — open one to explore it, or use ← → to move between tabs.
The St Kilda field mouse (Apodemus sylvaticus hirtensis) is a subspecies of the wood mouse that is endemic to the Scottish archipelago of St Kilda, the island 40 mi west of Benbecula in the Outer Hebrides, and 100 mi from mainland Scotland. Unique to the islands, the mouse is believed to have arrived on the boats of Viking settlers more than a millennium ago. It is not to be confused with the St Kilda house mouse (Mus musculus muralis), a subspecies of the house mouse which is now extinct. The last remaining human inhabitants of St Kilda abandoned the islands on 29 August 1930. Thereafter the mice that survived, even those occupying houses abandoned by the St Kildans, were field mice that had moved into the houses from the hills. The islands' house mice could not survive the harsh conditions for more than two years after the archipelago was abandoned by its human population. The islands currently have temporary human habitations. While field mice are widespread on Hirta, their concentration is more pronounced in the old village areas where holes provide access into buildings. Though rarely observed by casual visitors, the mouse is common and is present in every part of the habitat, from the harbour to the high point.
No narrative description available for this taxon yet.
Size & morphology3
Life cycle & reproduction8
Diet & foraging6
Habitat & environment2
Physiology & chemistry4
Other traits5
A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Apodemus sylvaticus has left across the world's sequence archives.
At a glance
★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.
Besides the big genome in the nucleus, cells carry a small, circular loop of DNA inside the cell's energy factories — the mitochondria. It is inherited almost only from the mother and is a leftover from ancient bacteria that moved into the cell. The mitochondrial markers above (ND*, COX, CYTB…) are read from exactly this loop. Outer ring = one strand, inner ring = the other.
The complete instruction manual Apodemus sylvaticus carries — its genome. We read it from three angles — how big it is, how the DNA is packed into chromosomes, and how completely it has been sequenced — and explain how to read each value as you go.
Genome sizehow big the whole instruction manual is
Measured in base pairs (bp) — the individual letters of DNA (human ≈ 3.2 Gb, a bacterium a few million). The chart places this genome on a logarithmic scale — each step to the right is ten times bigger — among reference organisms. Across species a bigger genome loosely tracks with larger cells, slower growth and lower-energy lifestyles (powered flight favours small genomes) — yet it does not imply more genes or a more advanced organism (the long-standing C-value paradox).
Chromosomes & ploidyhow the DNA is packaged
2n is the full chromosome count in a normal body cell; n is a gamete (egg or sperm), which carries half. Ploidy is how many complete chromosome sets each cell holds — 2× (diploid) is typical for animals, while higher levels (polyploidy) are common in plants. Click any value below to see the underlying records and sources.
2n 485×GoaT · Animal Chromosome Counts Database · GoaT · Tree of Sex Database · GoaT · Animal Genome Size Database +1
Sequencing statusassembly quality — how far to trust these numbers
Assembly level tells you how finished the sequence is — from fragmented contigs, through scaffolds, up to a full chromosome-level assembly. BUSCO % estimates completeness: the share of genes expected to be present that were actually found. These describe the data quality, not the organism.
How far back this lineage goes — and how we know. Everything here is measured in Ma, short for “mega-annum”: millions of years ago. The chart reads left to right like a calendar of the Earth, from the deep past on the left to today at the right edgetop to bottom like a core drilled through the Earth, from the deep past at the top down to today at the bottom.
At a glance
When this lineage existed
How to read this: the coloured strip along the bottomdown the left is the geological calendar — the standard epochs (Pliocene, Pleistocene…) every museum uses, shown so you can see which chapter of Earth's history this lineage lived in. This lineage is a young one, so the strip is zoomed in to epochs — the finer subdivisions inside a period. The solid bar is the fossil range: the span between the oldest and the youngest fossil that palaeontologists have assigned to Apodemus sylvaticus. Above itBeside it, the bars count how many dated finds fall in each slice of time; the tallest bar is labelled, and heights use a square-root scale so that thin slices stay visible next to rich ones. Read this as how well each stretch of time is preserved and studied — thick bars mean plenty of the right kind of rock and plenty of collectors, which is related to, but not the same as, how common it actually was. The orange marker is the DNA clock: DNA accumulates mutations at a roughly steady rate, so comparing this species' DNA with its relatives estimates when the lineage split off — independently of any fossil.
The two clocks disagree here. The fossil record reaches back to 5.33 Ma, but the molecular clock dates the lineage to only 2.86 Ma — about 2.48 Myr younger. A fossil cannot be older than the lineage it belongs to, so one of the two is off: either the fossil is assigned to the wrong species, or the clock is running fast.
How it livedPBDB
Record type171 841 records
Origin
Range
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Museum / Voucheredphysical evidence
Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Holding institutions45 of 93 geolocated
Institutions and collections holding physical, vouchered specimens of this species — click a row to fly to it on the map.
| Institution | Specimens |
|---|---|
| Universidad de Navarra, Museum of Zoologylocation not on record | 13 138 |
| Brussels, BE | 5 788 |
| RBINS-Scientific Heritagelocation not on record | 4 142 |
| Geneva, CH | 2 251 |
| UNIBUClocation not on record | 1 275 |
| Bern, CH | 988 |
| Washington, US | 841 |
| Adam Mickiewicz University in Poznańlocation not on record | 815 |
| South Kensington, GB | 727 |
| SECEMlocation not on record | 534 |
| MZLUlocation not on record | 472 |
| Dhaka, BD | 471 |
| Paro, BT | 466 |
| Belgrade : Natural History Museumlocation not on record | 412 |
| Copenhagen, DK | 410 |
| Salzburg, AT | 348 |
| CBGP (UMR INRAE, Cirad, IRD, Institut Agro | Montpellier)location not on record | 317 |
| Museo civico di Storia naturale Giacomo Doria di Genova | Giacomo Doria Natural History Museum in Genoalocation not on record | 306 |
| Instytut Ochrony Przyrody Polskiej Akademii Nauklocation not on record | 294 |
| MRI-PASlocation not on record | 277 |
| Natural History Museum, Aarhus Denmarklocation not on record | 274 |
| Barcelona, ES | 244 |
| Muzeum Górnośląskie w Bytomiulocation not on record | 222 |
| Chicago, US | 198 |
| Berkeley, US | 179 |
| Naturmuseum Solothurnlocation not on record | 173 |
| Bergen, NO | 152 |
| Universität Zürich, Naturhistorisches Museumlocation not on record | 152 |
| Kristiansand, NO | 146 |
| Tilburg, NL | 110 |
| Toronto, CA | 108 |
| Paris, FR | 107 |
| Liverpool, GB | 90 |
| IZLAlocation not on record | 88 |
| Wuzhou, CN | 87 |
| Musee d'Histoire Naturallelocation not on record | 86 |
| Lubbock, US | 83 |
| Winterthur, CH | 82 |
| Natural History Museum Rotterdamlocation not on record | 82 |
| Naturéum — Muséum cantonal des sciences naturelles, Lausanne, Département Zoologielocation not on record | 82 |
| Ann Arbor, US | 75 |
| Cambridge, US | 68 |
| Naturmuseum St. Gallenlocation not on record | 54 |
| Uniwersytet w Białymstokulocation not on record | 53 |
| Provincia di Livornolocation not on record | 51 |
| 50 | |
| Stockholm, SE | 47 |
| München, DE | 42 |
| NHMOlocation not on record | 38 |
| Los Angeles, US | 36 |
| Fribourg, CH | 33 |
| Helsinki, FI | 30 |
| Bonn, DE | 29 |
| Sevilla, ES | 29 |
| Centre Suisse de Cartographie de la Faunelocation not on record | 25 |
| Mongolian Museum of Natural Historylocation not on record | 25 |
| SFRAlocation not on record | 20 |
| NTNU-VMlocation not on record | 19 |
| Società romana di Scienze naturalilocation not on record | 17 |
| IMEDEAlocation not on record | 13 |
| Tacoma, US | 13 |
| CBDClocation not on record | 12 |
| New Haven, US | 10 |
| BioFokuslocation not on record | 9 |
| Edmonton, CA | 9 |
| Gothenburg, SE | 9 |
| BD-CSIClocation not on record | 7 |
| Museum Ludovicae Ulricae, Zoology Institute of the University of Uppsalalocation not on record | 7 |
| Ithaca, US | 6 |
| Tromsø, NO | 6 |
| Zacatecas, MX | 4 |
| Royal Museum for Central Africalocation not on record | 4 |
| Iowa City, US | 4 |
| Theriological Collection of Yuriy Fedkovych Chernivtsi National Universitylocation not on record | 3 |
| Bavarian State Collection of Zoologylocation not on record | 3 |
| EEZAlocation not on record | 3 |
| Museo de Zoología de la Universidad de Concepción (MZUC-UCCC)location not on record | 3 |
| Museo civico La Terra e l'Uomo di Crocetta del Montellolocation not on record | 3 |
| Natural History Museum of Utahlocation not on record | 2 |
| National Natural History Collectionslocation not on record | 2 |
| MUZOO - Musée d'histoire naturelle de La Chaux-de-Fondslocation not on record | 2 |
| Auckland, NZ | 2 |
| Denver, US | 2 |
| Radicondoli, IT | 2 |
| Banyoles, ES | 1 |
| Philip L. Wright Zoological Museumlocation not on record | 1 |
| Naturmuseum St.Gallenlocation not on record | 1 |
| Sam Noble Oklahoma Museum of Natural Historylocation not on record | 1 |
| Florida Museum of Natural History- Zoology, Paleontology & Paleobotanylocation not on record | 1 |
| Tomioka, JP | 1 |
| California State University, Long Beachlocation not on record | 1 |
| Bourges, FR | 1 |
| Agder Museum of Natural Historylocation not on record | 1 |
Cultivated / Captivenot free-living
A living individual in a botanical garden, zoo or nursery — cultivated or kept, not free-living.
Where the DNA of Apodemus sylvaticus was picked up in samples of water, soil or air — nobody saw the organism, only its DNA left behind. A trace is a clue that the species was near, not a confirmed sighting.
Signal
Where its DNA was found
How strong is each trace?
Modelled climatemodelled
How to read this: each dot is one detection of this species' DNA in an environmental sample. The confidence meter weighs how many independent studies and places back up the signal — one detection in one study is a hint; many across several studies is solid. Records dated before 2008 (when eDNA methods began) are treated as likely mislabeled and left off the map.