The Florida scrub jay (Aphelocoma coerulescens) is one of the species of scrub jay native to North America. It is the only species of bird endemic to the U.S. state of Florida and one of only 15 species endemic to the continental United States. Because of this, it is keenly sought by birders. It is known to have been present in Florida as a distinct species for at least 2 million years, and is possibly derived from the ancestors of Woodhouse's scrub jay. It measures 23 to in length, and weighs from 66 to, with an average 80.2 g. The wingspan of the jay is 33 -. It has a strong black bill, blue head and nape without a crest, a whitish forehead and supercilium, blue bib, blue wings, grayish underparts, gray back, long blue tail, black legs and feet.
No narrative description available for this taxon yet.
A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Aphelocoma coerulescens has left across the world's sequence archives.
At a glance
DNA specimens4
BINs1
Marker genes1
eDNA detections4
Countries1
The DNA barcodethe species' typical barcode, built from every sequenced specimen
COI-5P1 551 bp consensus4 specimens
ACGT
▸ drag or hover over the strip to read any position — letter and how much it varies
Violet ticks below the strip = positions where individuals differ; flat = the species' unchanging signature. 100% of positions are identical in every specimen.
Diversity (π)0.03%
Haplotypes1
BIN1
Where individuals differ — all 1 variable positions, in barcode order
★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.
★COI-5P
animal barcode
Organelle genome
Besides the big genome in the nucleus, cells carry a small, circular loop of DNA inside the cell's energy factories — the mitochondria. It is inherited almost only from the mother and is a leftover from ancient bacteria that moved into the cell. The mitochondrial markers above (ND*, COX, CYTB…) are read from exactly this loop. Outer ring = one strand, inner ring = the other.
▸ Tap any coloured segment — or a gene chip — to see what it is
Pick a coloured segment on the ring — or a gene chip — to read what that gene does.
protein-codingrRNAtRNA
06Genome at a glanceGoaT · NCBI
The complete instruction manualAphelocoma coerulescens carries — its genome. We read it from three angles — how big it is, how the DNA is packed into chromosomes, and how completely it has been sequenced — and explain how to read each value as you go.
Genome sizehow big the whole instruction manual is
Genome size1 525 680 000 bp
Measured in base pairs (bp) — the individual letters of DNA (human ≈ 3.2 Gb, a bacterium a few million). The chart places this genome on a logarithmic scale — each step to the right is ten times bigger — among reference organisms. Across species a bigger genome loosely tracks with larger cells, slower growth and lower-energy lifestyles (powered flight favours small genomes) — yet it does not imply more genes or a more advanced organism (the long-standing C-value paradox).
BACTERIUM Carsonella ruddii0.00016 Gb
FUNGUS0.04 Gb
INSECT0.25 Gb
THIS GENOME Aphelocoma coerulescens1.53 Gb
HUMAN3.2 Gb
WHEAT17 Gb
FERN Tmesipteris160.45 Gb
Sequencing statusassembly quality — how far to trust these numbers
Assembly level tells you how finished the sequence is — from fragmented contigs, through scaffolds, up to a full chromosome-level assembly. BUSCO % estimates completeness: the share of genes expected to be present that were actually found. These describe the data quality, not the organism.
Assembly levelChromosome
Completeness96.3% BUSCO
07Deep time2.58–0.01 Ma
How far back this lineage goes — and how we know. Everything here is measured in Ma, short for “mega-annum”: millions of years ago. The chart reads left to right like a calendar of the Earth, from the deep past on the left to today at the right edgetop to bottom like a core drilled through the Earth, from the deep past at the top down to today at the bottom.
At a glance
Fossil range2.58–0.01 Ma Pleistocene
Dated fossil finds5
DNA clock origin4.16 Ma TimeTree
Ghost lineage1.58 Myr older than any fossil
StatusStill living record runs to the present
When this lineage existed
How to read this: the coloured strip along the bottomdown the left is the geological calendar — the standard epochs (Pliocene, Pleistocene…) every museum uses, shown so you can see which chapter of Earth's history this lineage lived in. This lineage is a young one, so the strip is zoomed in to epochs — the finer subdivisions inside a period. The solid bar is the fossil range: the span between the oldest and the youngest fossil that palaeontologists have assigned to Aphelocoma coerulescens. Above itBeside it, each dot is one dated fossil find — few enough to count, so they are drawn individually rather than as a graph. The orange marker is the DNA clock: DNA accumulates mutations at a roughly steady rate, so comparing this species' DNA with its relatives estimates when the lineage split off — independently of any fossil. Where the DNA reaches further back than the oldest fossil, the gap is hatched: the ghost lineage. It means the lineage was already out there, but has left us nothing we have dug up yet.
fossil range (PBDB)each dot = one dated findDNA clock originghost lineage
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Coordinate accuracy80% within 1 km
≤100 m 1 458≤1 km 868≤10 km 256>10 km 310
2 892 georeferenced · 44 716 without coordinates
Open the mapobservation + sensor47 608
Museum / Voucheredphysical evidence
Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.
Coordinate accuracy61% within 1 km
≤100 m 658≤1 km 52≤10 km 314>10 km 138
1 162 georeferenced · 208 without coordinates
Open the institutions mapphysical evidence1 370
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
10Collections & institutions
Holding institutions29 of 46 geolocated
Institutions and collections holding physical, vouchered specimens of this species — click a row to fly to it on the map.
Institution
Specimens
US
324
Chicago, US
162
Ciudad de México, MX
144
Moore Laboratory of Zoology, Occidental Collegelocation not on record
132
Berkeley, US
90
Cambridge, US
74
Delaware Museum of Nature and Sciencelocation not on record
63
Louisiana State University, Museum of Zoologylocation not on record
43
Chongqing Museumlocation not on record
36
27
Ann Arbor, US
24
University of California Los Angeleslocation not on record
24
Wuzhou, CN
22
New Haven, US
20
Denver, US
18
San Diego, US
17
München, DE
17
South Kensington, GB
12
Ohio State University - Bird Division, Columbus, OH (OSUM)location not on record
11
Philadelphia, US
10
Seattle, US
9
Chicago, US
8
Tacoma, US
8
Mongolian Museum of Natural Historylocation not on record
8
Albany, US
6
St. Paul, US
6
Mexico City, MX
5
Universidad Católica de Manizaleslocation not on record
4
Museo civico La Terra e l'Uomo di Crocetta del Montellolocation not on record
4
Florida Museum of Natural History- Zoology, Paleontology & Paleobotanylocation not on record
4
ASNHClocation not on record
4
Auckland, NZ
3
Texas Cooperative Wildlife Collectionlocation not on record
2
Washington, US
2
Central Michigan University Museum of Cultural and Natural Historylocation not on record
2
Centro de Investigacion Cientifica y de Educacion Superior de Ensenadalocation not on record
2
Ohio Wesleyan University Museum of Natural Historylocation not on record
1
EL PASO, US
1
Toronto, CA
1
Geneva, CH
1
CASlocation not on record
1
Saint John, CA
1
Edmonton, CA
1
Mexico City, MX
1
Indiana State Universitylocation not on record
1
Ithaca, US
1
46 institutions · 1 357 of 1 370 vouchered records shown · 9 without an institution code
09Environmental DNA4 detections
Where the DNA of Aphelocoma coerulescens was picked up in samples of water, soil or air — nobody saw the organism, only its DNA left behind. A trace is a clue that the species was near, not a confirmed sighting.
Signal
Detections DNA found4
Studies independent surveys1
Signal confidence: weakweighed across independent studies, places & mapped detections
Where its DNA was found
0 of 4 detections have coordinates
Open the map0 countries0
How strong is each trace?
DNA read depthRead counts were not reported for this species — the map shows presence only, not how strong each trace was.
How to read this: each dot is one detection of this species' DNA in an environmental sample. The confidence meter weighs how many independent studies and places back up the signal — one detection in one study is a hint; many across several studies is solid. Records dated before 2008 (when eDNA methods began) are treated as likely mislabeled and left off the map.