Alligator mississippiensis
(Daudin, 1801) · speciesAt a glance
Sources15 archives
Databases and archives Alligator mississippiensis's data was compiled from.
WikipediaWikimedia Foundation18 languages↗
Animal Diversity WebUniv. of Michigan MZspecies account↗
BioWikiNetmultilingual Wikipediamultilingual↗
GBIFGlobal Biodiversity Information Facility71 086 records↗
ENAEuropean Nucleotide Archive · EMBL-EBI2 eDNA detections↗
BOLD SystemsCentre for Biodiversity Genomics16 specimens↗
LOTUSNatural Products (Wikidata)compounds↗
NPASSNat. Product Activity & Species Sourcecompounds↗
Open Tree of LifeOpenTreephylogeny backbone↗
GoaTGenomes on a Tree · Sangergenome & karyotype↗
NCBIUS National Library of Medicinegenome & karyotype↗
Tree of SexTree of Sex Consortiumgenome & karyotype↗
Paleobiology DatabasePBDB consortiumfossil record↗
WikidataWikimedia Foundationstructured facts↗
GLoBIGlobal Biotic Interactionsbiotic interactions↗Every layer below draws on the sources above — open one to explore it, or use ← → to move between tabs.
The American alligator (Alligator mississippiensis), sometimes referred to colloquially as a gator or common alligator, is a large crocodilian reptile native to the Southeastern United States. It is one of the two extant species in the genus Alligator, and is probably the largest species within its family Alligatoridae; it is larger than the only other living alligator species, the Chinese alligator. Adult male American alligators measure 3.4 to in length, and can weigh up to 560 kg, with unverified sizes of up to 5.85 m and weights of 1000 kg making it the largest member of the family Alligatoridae. Females are smaller, measuring 2.6 to in length. The American alligator inhabits subtropical and tropical freshwater wetlands, such as marshes and cypress swamps, from southern Texas to North Carolina.Virginia Living Museum. (2016, April 30). Herp highlight #1: American alligator. Retrieved April 08, 2021, from https://thevlm.org/herp-highlight-1-american-alligator/ It is distinguished from the sympatric American crocodile by its broader snout, with overlapping jaws and darker coloration, and is less tolerant of saltwater but more tolerant of cooler climates than the American crocodile, which is found only in tropical climates. American alligators are apex predators and consume fish, amphibians, reptiles, birds, and mammals. Hatchlings feed mostly on invertebrates. They play an important role as ecosystem engineers in wetland ecosystems through the creation of alligator holes, which provide both wet and dry habitats for other organisms. Throughout the year (in particular during the breeding season), American alligators bellow to declare territory, and locate suitable mates. Male American alligators use infrasound to attract females. Eggs are laid in a nest of vegetation, sticks, leaves, and mud in a sheltered spot in or near the water. Young are born with yellow bands around their bodies and are protected by their mother for up to one year. The conservation status of the American alligator is listed as Least Concern by the International Union for Conservation of Nature. Historically, hunting had decimated their population, and the American alligator was listed as an endangered species by the Endangered Species Act of 1973. Subsequent conservation efforts have allowed their numbers to increase and the species was removed from endangered status in 1987. The species is the official state reptile of three states: Florida, Louisiana, and Mississippi.
No narrative description available for this taxon yet.
Size & morphology3
Life cycle & reproduction9
Habitat & environment3
Physiology & chemistry2
Uses & economy1
Compounds documented for Alligator mississippiensis across natural-product and food-composition databases — not just the ~150 nutrients on a classic label ("nutritional dark matter").
Compound class profile5 classes
Documented compounds172 total
| Compound | Class | Amount | Source |
|---|---|---|---|
| (+)-alpha-Thujene | present | NPASS | |
| (+)-trans-Sabinene hydrate | present | NPASS | |
| (-)-alpha-Pinene | present | NPASS | |
| (-)-Linalool | present | NPASS | |
| (-)-trans-Carveol | present | NPASS | |
| (1R)-4-[(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1R,4S,6R)-4-hydroxy-2,2,6-trimethylcyclohexyl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenyl]-3,5,5-trimethylcyclohex-3-en-1-ol | present | NPASS | |
| (1R,2R,7S,10R,13R,14R,16S,19R,20S)-19-[(2R)-2-hydroxy-5-oxo-2H-furan-3-yl]-9,9,13,20-tetramethyl-4,8,15,18-tetraoxahexacyclo[11.9.0.02,7.02,10.014,16.014,20]docosane-5,12,17-trione | present | NPASS | |
| (1R,2R,7S,10S,13R,14R,16S,19S,20S)-19-(furan-3-yl)-9,9,13,20-tetramethyl-4,8,15,18-tetraoxahexacyclo[11.9.0.02,7.02,10.014,16.014,20]docosane-5,12,17-trione | present | NPASS | |
| (1R,3S,6S)-6-[(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4R)-4-hydroxy-2,6,6-trimethylcyclohexen-1-yl]-3,7,12,16-tetramethyloctadeca-3,5,7,9,11,13,15,17-octaenyl]-1,5,5-trimethyl-7-oxabicyclo[4.1.0]heptan-3-ol | present | NPASS | |
| (1S,2R,4S)-1-[(1E,3E,5E,7E,9E,11E,13E,15E)-16-[(2R,6S,7aR)-6-hydroxy-4,4,7a-trimethyl-2,5,6,7-tetrahydro-1-benzofuran-2-yl]-3,7,12-trimethylheptadeca-1,3,5,7,9,11,13,15-octaenyl]-2,6,6-trimethylcyclohexane-1,2,4-triol | present | NPASS |
A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Alligator mississippiensis has left across the world's sequence archives.
At a glance
★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.
Besides the big genome in the nucleus, cells carry a small, circular loop of DNA inside the cell's energy factories — the mitochondria. It is inherited almost only from the mother and is a leftover from ancient bacteria that moved into the cell. The mitochondrial markers above (ND*, COX, CYTB…) are read from exactly this loop. Outer ring = one strand, inner ring = the other.
The complete instruction manual Alligator mississippiensis carries — its genome. We read it from three angles — how big it is, how the DNA is packed into chromosomes, and how completely it has been sequenced — and explain how to read each value as you go.
Genome sizehow big the whole instruction manual is
Measured in base pairs (bp) — the individual letters of DNA (human ≈ 3.2 Gb, a bacterium a few million). The chart places this genome on a logarithmic scale — each step to the right is ten times bigger — among reference organisms. Across species a bigger genome loosely tracks with larger cells, slower growth and lower-energy lifestyles (powered flight favours small genomes) — yet it does not imply more genes or a more advanced organism (the long-standing C-value paradox).
Chromosomes & ploidyhow the DNA is packaged
2n is the full chromosome count in a normal body cell; n is a gamete (egg or sperm), which carries half. Ploidy is how many complete chromosome sets each cell holds — 2× (diploid) is typical for animals, while higher levels (polyploidy) are common in plants. Click any value below to see the underlying records and sources.
2n 325×GoaT · Animal Chromosome Counts Database · GoaT · Tree of Sex Database · GoaT · Animal Genome Size Database +1
Sequencing statusassembly quality — how far to trust these numbers
Assembly level tells you how finished the sequence is — from fragmented contigs, through scaffolds, up to a full chromosome-level assembly. BUSCO % estimates completeness: the share of genes expected to be present that were actually found. These describe the data quality, not the organism.
How far back this lineage goes — and how we know. Everything here is measured in Ma, short for “mega-annum”: millions of years ago. The chart reads left to right like a calendar of the Earth, from the deep past on the left to today at the right edgetop to bottom like a core drilled through the Earth, from the deep past at the top down to today at the bottom.
At a glance
When this lineage existed
How to read this: the coloured strip along the bottomdown the left is the geological calendar — the standard epochs (Pliocene, Pleistocene…) every museum uses, shown so you can see which chapter of Earth's history this lineage lived in. This lineage is a young one, so the strip is zoomed in to epochs — the finer subdivisions inside a period. The solid bar is the fossil range: the span between the oldest and the youngest fossil that palaeontologists have assigned to Alligator mississippiensis. Above itBeside it, the bars count how many dated finds fall in each slice of time; the tallest bar is labelled, and heights use a square-root scale so that thin slices stay visible next to rich ones. Read this as how well each stretch of time is preserved and studied — thick bars mean plenty of the right kind of rock and plenty of collectors, which is related to, but not the same as, how common it actually was. The orange marker is the DNA clock: DNA accumulates mutations at a roughly steady rate, so comparing this species' DNA with its relatives estimates when the lineage split off — independently of any fossil. Where the DNA reaches further back than the oldest fossil, the gap is hatched: the ghost lineage. It means the lineage was already out there, but has left us nothing we have dug up yet.
How it livedPBDB
Record type71 115 records
Origin
Range
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Museum / Voucheredphysical evidence
Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Holding institutions18 of 42 geolocated
Institutions and collections holding physical, vouchered specimens of this species — click a row to fly to it on the map.
| Institution | Specimens |
|---|---|
| Florida Museum of Natural History- Zoology, Paleontology & Paleobotanylocation not on record | 424 |
| New Haven, US | 311 |
| Chongqing Museumlocation not on record | 200 |
| Texas Cooperative Wildlife Collectionlocation not on record | 167 |
| Washington, US | 95 |
| Ann Arbor, US | 79 |
| Cambridge, US | 66 |
| North Carolina Museum of Natural Scienceslocation not on record | 64 |
| Montgomery, US | 31 |
| Southeastern Louisiana University, Vertebrate Museumlocation not on record | 30 |
| Berkeley, US | 13 |
| CASlocation not on record | 11 |
| Ohio State University - Reptile Division, Columbus, OH (OSUM)location not on record | 5 |
| Wuzhou, CN | 5 |
| Sam Noble Oklahoma Museum of Natural Historylocation not on record | 4 |
| München, DE | 4 |
| ASNHClocation not on record | 4 |
| Los Angeles, US | 3 |
| Fort Hays State University, Sternberg Museumlocation not on record | 3 |
| Tacoma, US | 3 |
| mcnhlocation not on record | 2 |
| Museo civico La Terra e l'Uomo di Crocetta del Montellolocation not on record | 2 |
| UBCBBMlocation not on record | 2 |
| Natick, US | 2 |
| 2 | |
| Museum and Art Gallery of the Northern Territorylocation not on record | 1 |
| Ohio Wesleyan University Museum of Natural Historylocation not on record | 1 |
| New Mexico Museum of Natural History and Sciencelocation not on record | 1 |
| Nasarawa State University Keffi (NSUK)location not on record | 1 |
| Universidad Católica de Manizaleslocation not on record | 1 |
| Texas Memorial Museum, Texas Natural History Collectionlocation not on record | 1 |
| Oulu, FI | 1 |
| University of Texas at Arlingtonlocation not on record | 1 |
| Honolulu, US | 1 |
| University of California San Diegolocation not on record | 1 |
| Muzeum Górnośląskie w Bytomiulocation not on record | 1 |
| University of Alberta Museumslocation not on record | 1 |
| Iowa City, US | 1 |
| EL PASO, US | 1 |
| Auckland, NZ | 1 |
| Provo, US | 1 |
| ASUlocation not on record | 1 |
Where the DNA of Alligator mississippiensis was picked up in samples of water, soil or air — nobody saw the organism, only its DNA left behind. A trace is a clue that the species was near, not a confirmed sighting.
Signal
Where its DNA was found
How strong is each trace?
Modelled climatemodelled
How to read this: each dot is one detection of this species' DNA in an environmental sample. The confidence meter weighs how many independent studies and places back up the signal — one detection in one study is a hint; many across several studies is solid. Records dated before 2008 (when eDNA methods began) are treated as likely mislabeled and left off the map.