A DNA barcode is a short, standardised stretch of genes that works like a fingerprint — enough to tell one species from another. Below is the molecular trace Agaricia lamarcki has left across the world's sequence archives.
At a glance
DNA specimens2
BINs1
Marker genes1
Marker genes sequenced
★ the standard DNA barcode for this group — the short region actually read to tell this species apart. The rest are extra genes sequenced along the way.
★COI-5P
animal barcode
06Genome at a glanceGoaT · NCBI
The complete instruction manualAgaricia lamarcki carries — its genome. We read it from three angles — how big it is, how the DNA is packed into chromosomes, and how completely it has been sequenced — and explain how to read each value as you go.
Genome sizehow big the whole instruction manual is
Genome size≈502 925 312 bp assembly estimate
Measured in base pairs (bp) — the individual letters of DNA (human ≈ 3.2 Gb, a bacterium a few million). The chart places this genome on a logarithmic scale — each step to the right is ten times bigger — among reference organisms. Across species a bigger genome loosely tracks with larger cells, slower growth and lower-energy lifestyles (powered flight favours small genomes) — yet it does not imply more genes or a more advanced organism (the long-standing C-value paradox).
BACTERIUM Carsonella ruddii0.00016 Gb
FUNGUS0.04 Gb
INSECT0.25 Gb
THIS GENOME Agaricia lamarcki0.50 Gb
HUMAN3.2 Gb
WHEAT17 Gb
FERN Tmesipteris160.45 Gb
Sequencing statusassembly quality — how far to trust these numbers
Assembly level tells you how finished the sequence is — from fragmented contigs, through scaffolds, up to a full chromosome-level assembly. BUSCO % estimates completeness: the share of genes expected to be present that were actually found. These describe the data quality, not the organism.
Assembly levelScaffold
Completeness94.9% BUSCO
07Deep time11.6–0 Ma
How far back this lineage goes — and how we know. Everything here is measured in Ma, short for “mega-annum”: millions of years ago. The chart reads left to right like a calendar of the Earth, from the deep past on the left to today at the right edgetop to bottom like a core drilled through the Earth, from the deep past at the top down to today at the bottom.
At a glance
Fossil range11.6–0 Ma Miocene → Holocene
Dated fossil finds46
Most finds around1.75 Ma 36 finds · Pleistocene
DNA clock origin1.44 Ma TimeTree
StatusStill living record runs to the present
When this lineage existed
How to read this: the coloured strip along the bottomdown the left is the geological calendar — the standard epochs (Pliocene, Pleistocene…) every museum uses, shown so you can see which chapter of Earth's history this lineage lived in. This lineage is a young one, so the strip is zoomed in to epochs — the finer subdivisions inside a period. The solid bar is the fossil range: the span between the oldest and the youngest fossil that palaeontologists have assigned to Agaricia lamarcki. Above itBeside it, the bars count how many dated finds fall in each slice of time; the tallest bar is labelled, and heights use a square-root scale so that thin slices stay visible next to rich ones. Read this as how well each stretch of time is preserved and studied — thick bars mean plenty of the right kind of rock and plenty of collectors, which is related to, but not the same as, how common it actually was. The orange marker is the DNA clock: DNA accumulates mutations at a roughly steady rate, so comparing this species' DNA with its relatives estimates when the lineage split off — independently of any fossil.
fossil range (PBDB)dated finds per sliceDNA clock origin
The two clocks disagree here. The fossil record reaches back to 11.6 Ma, but the molecular clock dates the lineage to only 1.44 Ma — about 10.2 Myr younger. A fossil cannot be older than the lineage it belongs to, so one of the two is off: either the fossil is assigned to the wrong species, or the clock is running fast.
How it livedPBDB
Environmentmarine
Life habitintermediate-level epifaunal, colonial, clonal
median 19.9 m · max 887.5 m · 3 173 records with depth
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
Coordinate accuracy80% within 1 km
≤100 m 1 649≤10 km 11>10 km 397
2 057 georeferenced · 5 030 without coordinates
Open the mapobservation + sensor7 087
Museum / Voucheredphysical evidence
Backed by a physical specimen — a herbarium sheet, sample or voucher held in a collection. “Vouchered” means supported by material evidence, not just an observation.
Coordinate accuracy45% within 1 km
≤100 m 10≤10 km 10>10 km 2
22 georeferenced · 595 without coordinates
Open the institutions mapphysical evidence617
Wildobservation + sensor
Human sightings and records, or camera-trap / sensor detections — someone (or a device) saw or captured the species in the wild.
10Collections & institutions
Holding institutions4 of 10 geolocated
Institutions and collections holding physical, vouchered specimens of this species — click a row to fly to it on the map.
Institution
Specimens
Washington, US
182
Universidad de los Andes (UniAndes)location not on record
149
New Haven, US
8
Moscow State Universitylocation not on record
6
Tapachula, MX
2
Universidad del Valle (UniValle)location not on record
2
UM-RSMASlocation not on record
1
Florida Museum of Natural History- Zoology, Paleontology & Paleobotanylocation not on record
1
CASlocation not on record
1
Saint John, CA
1
10 institutions · 353 of 617 vouchered records shown · 14 without an institution code